SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G32590 | AT | Annotation by Michelle Graham. TAIR10: 2Fe-2S ferredoxin-like superfamily protein | chr4:15721417-15722776 FORWARD LENGTH=173 | SoyBase | E_val: 7.00E-36 | ISS |
| GO:0009688 | GO-bp | Annotation by Michelle Graham. GO Biological Process: abscisic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009055 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: electron carrier activity | SoyBase | N/A | ISS |
| GO:0051536 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron-sulfur cluster binding | SoyBase | N/A | ISS |
| PTHR23426 | Panther | FERREDOXIN/ADRENODOXIN | JGI | ISS | |
| PTHR23426:SF2 | Panther | FERREDOXIN | JGI | ISS | |
| PF00111 | PFAM | 2Fe-2S iron-sulfur cluster binding domain | JGI | ISS | |
| UniRef100_G7I6B2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Electron carrier/ electron transporter/ iron ion binding protein n=2 Tax=Medicago truncatula RepID=G7I6B2_MEDTR | SoyBase | E_val: 1.00E-46 | ISS |
| UniRef100_I1MWM5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MWM5_SOYBN | SoyBase | E_val: 5.00E-98 | ISS |
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Glyma17g30770 not represented in the dataset |
Glyma17g30770 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g16071 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g205000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g30770.3 sequence type=transcript gene model=Glyma17g30770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTCTCATTGGCCATTTGCAGTTTGCACTATTTTACATCACAAAAGATAAAAACAGAGAAAGAAAGATTATTTAGGAACAAGAAGGTGTGCGCGCGCGAACCATCCATAACAGAAACAACAATGGCTTCCATGAGTATATTCACCACCATTTCCCTCGCCGCCGACGCCCGGAATCCGGCCATCTATTTTCCCCGGCGGCGGCAGCCCAACACGGTCATTTTCGCCGCCGCCTCATCGCCGGAATCTCCTCCAGAAATAGAGCTCGAGTTCATCGGGCCAAAACCGGGAAGTGATGGATCGTACCCGGTGGAGAGAGTGAAAGCAATAAGCGGAGAGAAGCTGTTGAGGAACATCATGTTGGATAACAAGATCGAGCTTTATGCCACCTATGGGAAGCTGATGAACTGCGCGGGAGGTGGTAGCTGCGGAACATGCATAGTAGAGATTATTGAAGGAAAGGATCTTTTAAATGAAAGAACAAACACTGAACTCAGATATCTTAGTAAGGTTGCTGTTCAAAGGATTCCTCAGTGGAAGAAGTAGTAAACCATGGATGCTTAGAAAGAAGAGCTCCATATGTTCCTCCTCAATTTGACACAGTTTGAAGCAACACTACAAATCATTGATCCATGCATCATAAATTTATGAAAACTTTTGCTTTGGTTCTTAATGGAATCTTGCAGATATCTGTAATGTATAATTTCCCTTCATGTTTTGTAATGGTTGCCACTTGGCTTCAATTCTTTAGGTT
>Glyma17g30770.1 sequence type=CDS gene model=Glyma17g30770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCCATGAGTATATTCACCACCATTTCCCTCGCCGCCGACGCCCGGAATCCGGCCATCTATTTTCCCCGGCGGCGGCAGCCCAACACGGTCATTTTCGCCGCCGCCTCATCGCCGGAATCTCCTCCAGAAATAGAGCTCGAGTTCATCGGGCCAAAACCGGGAAGTGATGGATCGTACCCGGTGGAGAGAGTGAAAGCAATAAGCGGAGAGAAGCTGTTGAGGAACATCATGTTGGATAACAAGATCGAGCTTTATGCCACCTATGGGAAGCTGATGAACTGCGCGGGAGGTGGTAGCTGCGGAACATGCATAGTAGAGATTATTGAAGGAAAGGATCTTTTAAATGAAAGAACAAACACTGAACTCAGATATCTTAGTAAGAAACCCGAATCTTGGAGGCTGGCTTGTCAAACTATTGTTGGAAACAAAGAAAACTCTGGCAAGGTTGCTGTTCAAAGGATTCCTCAGTGGAAGAAGTAG >Glyma17g30770.3 sequence type=CDS gene model=Glyma17g30770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTCTCATTGGCCATTTGCAGTTTGCACTATTTTACATCACAAAAGATAAAAACAGAGAAAGAAAGATTATTTAGGAACAAGAAGGTGTGCGCGCGCGAACCATCCATAACAGAAACAACAATGGCTTCCATGAGTATATTCACCACCATTTCCCTCGCCGCCGACGCCCGGAATCCGGCCATCTATTTTCCCCGGCGGCGGCAGCCCAACACGGTCATTTTCGCCGCCGCCTCATCGCCGGAATCTCCTCCAGAAATAGAGCTCGAGTTCATCGGGCCAAAACCGGGAAGTGATGGATCGTACCCGGTGGAGAGAGTGAAAGCAATAAGCGGAGAGAAGCTGTTGAGGAACATCATGTTGGATAACAAGATCGAGCTTTATGCCACCTATGGGAAGCTGATGAACTGCGCGGGAGGTGGTAGCTGCGGAACATGCATAGTAGAGATTATTGAAGGAAAGGATCTTTTAAATGAAAGAACAAACACTGAACTCAGATATCTTAGTAAGGTTGCTGTTCAAAGGATTCCTCAGTGGAAGAAGTAG
>Glyma17g30770.1 sequence type=predicted peptide gene model=Glyma17g30770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASMSIFTTISLAADARNPAIYFPRRRQPNTVIFAAASSPESPPEIELEFIGPKPGSDGSYPVERVKAISGEKLLRNIMLDNKIELYATYGKLMNCAGGGSCGTCIVEIIEGKDLLNERTNTELRYLSKKPESWRLACQTIVGNKENSGKVAVQRIPQWKK* >Glyma17g30770.3 sequence type=predicted peptide gene model=Glyma17g30770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high VSLAICSLHYFTSQKIKTEKERLFRNKKVCAREPSITETTMASMSIFTTISLAADARNPAIYFPRRRQPNTVIFAAASSPESPPEIELEFIGPKPGSDGSYPVERVKAISGEKLLRNIMLDNKIELYATYGKLMNCAGGGSCGTCIVEIIEGKDLLNERTNTELRYLSKVAVQRIPQWKK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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