Glyma17g30240 - SoyBase

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Report for Sequence Feature Glyma17g30240

Feature Type:	gene_model
Chromosome:	Gm17
Start:	33208595
stop:	33255605
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g30240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G25660	AT	Annotation by Michelle Graham. TAIR10: embryo defective 2410 \| chr2:10916456-10927390 REVERSE LENGTH=2166	SoyBase	E_val: 0	ISS
GO:0009630	GO-bp	Annotation by Michelle Graham. GO Biological Process: gravitropism	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF04357	PFAM	Family of unknown function (DUF490)	JGI		ISS
UniRef100_D7LBF6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: EMB2410 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LBF6_ARALL	SoyBase	E_val: 0	ISS
UniRef100_I1MWL6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MWL6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g30240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g30240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g204000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g30240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g30240

Limit To All Plant Sequences

>Glyma17g30240.2   sequence type=CDS   gene model=Glyma17g30240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGATGGGAAGCACGATCATTGGTTGATGGACAAAGGTGTTAATTATGATACGAAACACACAGCTTTGGAAAAATCATTTGGAGTAAGATTTCCTGGATTGGGACTTCGATTTTGGTCCAGAGTAATATCAGGGCTTAGGAAACACAAGTTGAATAGGAAGGCTAATGGGAGTAACATCTTTGCATCTGGTGGTGCTATCAAAAAGATAATATTGGAACGTAGTGCATCAGCTGCTCATGCATACTTTTGTGATCAACCACAATGGAAGTTTGAGGAGCCTTCATCACCTTCTGAAAGTTATGGTTTTATGAGTCATGATATGCATTTGGTGAAAAGTGAGGTTGACAGAAATACAATATCTGTTATTGTTAGTGATGAAAATAGAAGTGATGATAACCAAAGTGGAACACAATTCAAAGATCTGGGATTCCAGTCCCCCTTAGTAAATGAAAATGTTAGCAGTCAATCAGATTATTTAAAGTTTGTCTGTGATTCAACTTTACGGACAAGAGAGAGTGAAATTGAAAATTTGCAATCTAGTGATGATGTTGCAAAACCTGCTAATCCAAATAGTAGTACAGTGAAAAATGAGGAGTTTGTACCATATGTTGCTGAGAATCAAATTGATGATAATGATAGTTCATCAGGGGGCCAACAGGGTTTGCCATCTGAAGATTTGGGTATTGTGAAGCCTGAGCCTCAGTTGGCAACTTATTTTCAAAATCCATTTGAGCACTTGCTCGTGAAATTTGGCTTAACCTCATTTTTAAAAAATATTGAAGAGTTGATATCTCATTTTCTTTCTGGTTCCATTGAAATGTTGAAGTCTGATGTGGGTCTGAAAGTTGAAGATATTGTTTCAGAACATGTTGATGGGGTAGATTTTGTGCAGTCTGAAGGCGTTACGAAGACTCTGCCTGTTACGCTGGATTCAGTTCATTTCAGAGGTGCAACACTGATGCTACTTGCATATGGTGACAAGGAAGTTAGGGAGATGGAGAATGTCAATGGAAATGTAAAGTTCCAAAACCACTATAGTCGCATACATGTGGATCTGAGTGGAAATTGTAATACCTGGAGATCAGATATTATATCTGAAGATGGAGGCTGGTTGTCTGCCAATGTTTTTGTTGACACTATTGAGCAGAATTGGCATGCTAATTTAAAAATTGATAATCTTTTTGTCCCGCTGTTTGAAAGGATCCTTGAAATTCCAATTACATGGTCTAAAGGGTGGGCTAGTGGCGAGGTTCACTTGTGCATGTCAAAGGGGGAGACTTTTCCAAATTTTCATGGACAACTTGATGTTAGAGGGTTGGATTTCCAACTGTTGGATGCTCCATCATCTTTTTCTAACATATCAGCGAGTTTATGTTTTCGTGGTCAAAGAATATTTTTACACAATGCAAGTGGCTGGTTTGGTAGTGTTCCTTTAGAAGCATCAGGAGACTTTGGCATTCATCCCGAAGAAGGAGAGTTTCATCTTATGTGTCAGGTTCCTGGTGTTGAAGTGAATGCTTTGATGAGAACTTTCAAGATGAAACCTCTTCTCTTCCCGCTAGCTGGATCAGTAACTGCTCTATTTAATTGTCAAGGCCCACTGGATACTCCTGTATTTGTTGGCACTGGAATGGTTTCTAGGACATTCTCTTATTTACAGACTGAGAGCACTGCATCTGTAGCATCTGAAGCACTTGCTACGAGTAAGGAAGCTGGAGCGCTGGCAGCATTTGATCGTGTTCCATTCTCATATGTATCTGCTAATTTCACTTTCAACACTGATAACTGTGTTGCTGATTTATATGGAATTAGGGCATGCCTTGTAGATGGAGGTGAAATTCGTGGGGCTGGGAATGCATGGATATGCCCAGAGGGTGAAGAGGATGAGACATCAATAGATGTGAATTTTTCTGGAAGTTTGGCCATCGATAACATTGTGCTTCGTTATATACCAAGTTCTTATCATCAGATGCCACTTAAATTAGGGGTATTAAATGGAGAAACAAAACTTTCAGGATCTCTTTTAAGACCAAGGTTTGATATAAAATGGACTGCACCTACAGCAGAAGGGTCTTTCAATGATGCTCGAGGAGACATCATAATCTCACATGATTATATTACTGTGAATTCTGCTTCTGCTGCATTTGATCTGTATATGAGAGTTCAAACATCTTATCCTGATGATTTCCATCATAAAAGAGAAGAGTATAATATTCCAAGAGCTATTCCGCTTACTATTGATGGAGTTGAGTTGGATTTACGTATGCGTGGGTTTGAATTCTTCAGTTTGGTTTCTGCATACGCTATGGATTCCCCAAGGCCTTTGCATTTGAAAGCATCTGGAAGGATCAAGTTTCAGGGAAAGGTTTTAAAACCTAATGGCAATATTAGCGAACAAAATTTTGAAATGACAAGGCAGCATGTGCAAATGTTGGAGAAAGGAATTGCAGATAGTCTCATTGGCGAGGTTTCAATCTCTGGTCTCAAACTGAATCAACTGATGCTTGCACCTCAGTTGTCTGGGTTGCTGAGGCTTTCTCCTGGGGGTATCAAGCTGGATGCCTCTGGTAGAACTGATGAAAGTCTTGCAGTGGAGTTTGTTGGGCCACTACAGCCCAGTAGCGAAGATGGTCTGCAAAGTGGGAAACTGTTGTCTATTTCCCTTCAGAAAGGGCAATTGAGGGCTAACATTTGTTTTCAACCATTTCATTCTGCTAACTTGGAGGTACGGCATTTTCCACTTGATGAATTAGAGCTCGCTTCTCTCAGGGGAACTATACAGAGAGCAGAAATCCAGCTTAATCTTCAAAAAAGAAGAGGACATGGAGTCCTGTCTGTACTTCAGCCAAAATTCAGTGGCGTGCTCGGCGAAGCCCTAGATGTGGCAGCTAGGTGGAGTGGAGATGTTATCACTATTGAAAAAACAGTTTTGCAACAAAACTACAGTTGTTATGAACTTCAAGGCGAATATGTGTTGCCCGGCACCCGAGATCGTAATCCCATTGACAAAGGTGGCCTTATAAAAAGACTAATGTCTGGTCATATTGGTAATGCTATATCCTCGATGGGCAGGTGGAGAATGAAACTTGAAGTTCGTAGAGCTGAGGTTGCTGAGATGCTTCCCCTTGCTAGGCTTCTTTCTCGAAGTATGGATCCTGCTGTTCAGTCAAGATCTAAGGATTTCTTCATGCAAAGTTTGCAGTCAGTAGGATTATATACCGAAAGCCTTCAACAATTGCTTGAGACAGTGAGGGGGCTTCATGCTCCATCAAATGATGTTGTTCTTGAAGACTTAAGTCTGCCTGGTTTATCTGAACTCAAAGGTCACTGGCATGGATCTCTTGACGCTAGTGGTGGGGGAAATGGAGACACCCTGGCAGAATTTGACTTTCATGGGGAGGACTGGGAATGGGGAGACTACAAAACTCAGCGTGTGTTGGCAGTTGGTGCTTACAGTAATGATGATGGTATGTACCTGGAGAGAATTTTTATCCAGAAGGATAATGCCACCATCCATGCAGATGGAACATTGCTAGGACCTAAAACCAACCTCCATTTTGCGGTATTAAATTTTCCTGTTAGTCTGGTCCCAACTGTAGTCCAGATCATTGAATCTACAGCAATGGATGTTGTCCATTCTCTGCGACAGTTGTTGGCACCCATTAAGGGTATATTGCATATGGAAGGAGATCTTAGAGGAAGTTTAGCAAAACCAGAATGTGATGTGCAAGTAAGGCTCCTGGATGGTTCCGTTGGTGGTGTTGATCTTGGAAGAGCCGAAGTTGTTGCTTCTCTAACCTCAACCAGTCGTTTTCTATTCAATGCAAAATTTGAGCCTACAACCCAAAATGGTCATGTACTCATTCAGGGTAGCATTCCTGTTGCATTTGTGCAAAATAACACGTTACAGGAGGATGTAGAATTAGATAAGAGTCAGGTTACTTGGGTTCCTGATTGGGTGAAGGAGAAGAATAGAGGGACCGTTGATGATGCCAGCGACAAAAAAGTTTCTAGAGATAGAAACGAAGAAGGTTGGAATACTCAATTAGCAGAAAGCCTTAAAGGTTTAAATTGGCAAATTTTAGATGATGGAGAAGTCAGGATTGATGCTGATATAAAAGATGGGGGAATGACATTGGTTACAGCTTTATCTCCTCATGTGAATTGGCTTCATGGCAATGCGGATTTGAAGCTAGAGGTCAGAGGTACAGTTGATCAACCAGTACTTAATGGACACGCATCTTTCCACAGGGCATCTATTTCTTCACCAGTGCTCCAAAAACCACTAACCAACTTTGGTGGAAATGTTCATGTGCAATCAAACAGGTTATGCATCACCTCACTGGAGAGTAGGGTAAGCAGAAAAGGAAAGCTTCTTGTAAAAGGGAACCTGCCACTCAGAACTAGTGAAGCAGCCCCAGATGACAAGATTGAATTGAAGTGCGAAGTTCTGGAAGTACGGGCACAAAAAGTATTAAGTGGTCAGGTTGATTCTCAGTTGCAAATAACTGGTTCAATATTGCAACCAAACATATCTGGGAATATCAAAATAAGTCAGGGAGAAGCATATTTGCCTCATGACAGAGGTGGTACTCCTGCTTCTAATAGATTTCCATCAAATCAGTCTGTGCTTCCTACTGCTGGTGTTAGTCGCATGTTTGCTTCGAGATATGTTTCAAGATTTCTCAACTCAGAATCTGCTTCTTCAAGGGAAAAAGTATCTCAATCCTCTGGCTCTGTGCCAGTTAATAAGTCAACTCAGGTTGAAAAGCAGATGGAGCAAGTGCAGATTAAACCAAATGTAGAAATCTGTCTCAATGATTTGAAGCTTGTGCTTGGACCAGAGTTGAAGATAGTTTATCCTTTGATTCTTAATTTTGGTGTAAGTGGAGAGCTTGAGTTAAATGGTCCGGCCCATCCCAAATGGATAAAACCTAGAGGCATACTGACATTTGAGAATGGTGAAGTTGATCTAGTTGCAACACAGGTGAGGTTAAAACGAGAGCATTTAAACATTGCAAAGTTTGAGCCTGAATATGGACTAGATCCAATGCTTGATTTAGCTTTGGTTGGATCTGAGTGGCAATTCAGAATTCAAGGTAGAGCTAGCAATTGGAAGGACAAACTTGTGGTGACCTCAACACGTTCTGTGGAGCAGGATGCACTCTCGCCCACTGAGGCTGCCAGAAGATTTGAGAGTCAGTTGGCTGAATCCATTTTGGAAGGCAATGGTCAGCTTGCTTTTGAAAAGCTTGCAACTGCAACTCTGGAAAAATTGATGCCACGAATAGAAGGGAAGGGAGAGTTTGGCCAGGCTAGGTGGAGGCTAGTGTATGCACCTCAGATTCCTAGTTTAGTTTCTGTTGATCCTACAGCAGATCCTCTAAAGTCACTCGCCAGTAATATATCTTTTGGTACAGAAGTTGAAGTTCAGCTTGGGAAACGTCTTCAGGCCACAATCGTTAGGCAAATGAAGGAGTCCGAGATGGCAATGCAATGGACATTGAGCTATCTGCTTACAAGTCGTTTGCGAGTGCTCCTACAATCTGCTGCATCCAAACGCCTTCTTTTTGAATATTCTGCCACATCCCAGGATTGA

Predicted protein sequences of Glyma17g30240

Limit To All Plant Sequences

>Glyma17g30240.2   sequence type=predicted peptide   gene model=Glyma17g30240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNDGKHDHWLMDKGVNYDTKHTALEKSFGVRFPGLGLRFWSRVISGLRKHKLNRKANGSNIFASGGAIKKIILERSASAAHAYFCDQPQWKFEEPSSPSESYGFMSHDMHLVKSEVDRNTISVIVSDENRSDDNQSGTQFKDLGFQSPLVNENVSSQSDYLKFVCDSTLRTRESEIENLQSSDDVAKPANPNSSTVKNEEFVPYVAENQIDDNDSSSGGQQGLPSEDLGIVKPEPQLATYFQNPFEHLLVKFGLTSFLKNIEELISHFLSGSIEMLKSDVGLKVEDIVSEHVDGVDFVQSEGVTKTLPVTLDSVHFRGATLMLLAYGDKEVREMENVNGNVKFQNHYSRIHVDLSGNCNTWRSDIISEDGGWLSANVFVDTIEQNWHANLKIDNLFVPLFERILEIPITWSKGWASGEVHLCMSKGETFPNFHGQLDVRGLDFQLLDAPSSFSNISASLCFRGQRIFLHNASGWFGSVPLEASGDFGIHPEEGEFHLMCQVPGVEVNALMRTFKMKPLLFPLAGSVTALFNCQGPLDTPVFVGTGMVSRTFSYLQTESTASVASEALATSKEAGALAAFDRVPFSYVSANFTFNTDNCVADLYGIRACLVDGGEIRGAGNAWICPEGEEDETSIDVNFSGSLAIDNIVLRYIPSSYHQMPLKLGVLNGETKLSGSLLRPRFDIKWTAPTAEGSFNDARGDIIISHDYITVNSASAAFDLYMRVQTSYPDDFHHKREEYNIPRAIPLTIDGVELDLRMRGFEFFSLVSAYAMDSPRPLHLKASGRIKFQGKVLKPNGNISEQNFEMTRQHVQMLEKGIADSLIGEVSISGLKLNQLMLAPQLSGLLRLSPGGIKLDASGRTDESLAVEFVGPLQPSSEDGLQSGKLLSISLQKGQLRANICFQPFHSANLEVRHFPLDELELASLRGTIQRAEIQLNLQKRRGHGVLSVLQPKFSGVLGEALDVAARWSGDVITIEKTVLQQNYSCYELQGEYVLPGTRDRNPIDKGGLIKRLMSGHIGNAISSMGRWRMKLEVRRAEVAEMLPLARLLSRSMDPAVQSRSKDFFMQSLQSVGLYTESLQQLLETVRGLHAPSNDVVLEDLSLPGLSELKGHWHGSLDASGGGNGDTLAEFDFHGEDWEWGDYKTQRVLAVGAYSNDDGMYLERIFIQKDNATIHADGTLLGPKTNLHFAVLNFPVSLVPTVVQIIESTAMDVVHSLRQLLAPIKGILHMEGDLRGSLAKPECDVQVRLLDGSVGGVDLGRAEVVASLTSTSRFLFNAKFEPTTQNGHVLIQGSIPVAFVQNNTLQEDVELDKSQVTWVPDWVKEKNRGTVDDASDKKVSRDRNEEGWNTQLAESLKGLNWQILDDGEVRIDADIKDGGMTLVTALSPHVNWLHGNADLKLEVRGTVDQPVLNGHASFHRASISSPVLQKPLTNFGGNVHVQSNRLCITSLESRVSRKGKLLVKGNLPLRTSEAAPDDKIELKCEVLEVRAQKVLSGQVDSQLQITGSILQPNISGNIKISQGEAYLPHDRGGTPASNRFPSNQSVLPTAGVSRMFASRYVSRFLNSESASSREKVSQSSGSVPVNKSTQVEKQMEQVQIKPNVEICLNDLKLVLGPELKIVYPLILNFGVSGELELNGPAHPKWIKPRGILTFENGEVDLVATQVRLKREHLNIAKFEPEYGLDPMLDLALVGSEWQFRIQGRASNWKDKLVVTSTRSVEQDALSPTEAARRFESQLAESILEGNGQLAFEKLATATLEKLMPRIEGKGEFGQARWRLVYAPQIPSLVSVDPTADPLKSLASNISFGTEVEVQLGKRLQATIVRQMKESEMAMQWTLSYLLTSRLRVLLQSAASKRLLFEYSATSQD*

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