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Report for Sequence Feature Glyma17g29875

Feature Type:gene_model
Chromosome:Gm17
Start:32780596
stop:32782329
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g29875
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G26370AT Annotation by Michelle Graham. TAIR10: O-fucosyltransferase family protein | chr3:9656886-9659741 FORWARD LENGTH=557 SoyBaseE_val: 1.00E-27ISS
GO:0006084GO-bp Annotation by Michelle Graham. GO Biological Process: acetyl-CoA metabolic process SoyBaseN/AISS
GO:0016126GO-bp Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process SoyBaseN/AISS
GO:0016132GO-bp Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process SoyBaseN/AISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005802GO-cc Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network SoyBaseN/AISS
GO:0016757GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups SoyBaseN/AISS
UniRef100_G7J356UniRef Annotation by Michelle Graham. Most informative UniRef hit: Auxin-independent growth protein n=1 Tax=Medicago truncatula RepID=G7J356_MEDTR SoyBaseE_val: 6.00E-43ISS
UniRef100_I1MYM6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MYM6_SOYBN SoyBaseE_val: 2.00E-55ISS

Expression Patterns of Glyma17g29875
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g29875 not represented in the dataset
Glyma17g29875 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g29875 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g203300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g29875
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g29875
>Glyma17g29875.1   sequence type=CDS   gene model=Glyma17g29875   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGACCACGAGCTTCACTCCAATGACCTCACCACCTCACGTGCCACTGCCTGAGTGTCATCTCCCTCACCTTCGTGAGCAGCTTTGGGTGCAATTCGAGCAATGCCACCGCCCACAGAAGCGACGAAGTGGACGCGTCCTACGCTGCAAAGAGGAAGTCGAAGAGGTAGCCACTGATCTCGGCGTCGGTGGAGATCGGCTGCGGCGTGTCTCCGACACTGGCGCCAGCGATTCCTCCCCTCTCATTCCCGACAACCACCTCGCCAACGACAACGAGCACGATCGACACTTGTCCAAGGACCGCGACCGGCACATGTGCTTCTTCTTCACCGACGACCCTATGGTTTCGCCTCACAACTCCAGGATCTCTCTTGTTTTCACATTACTTCTTCTTCTCGTTGGTTTAGTCTCCCATTTCACCATCTTCAATAATCTCAATGCGCCTTACTTGTGTAAAAAAGATGGGATTGTTCTTCACTGCCCGCATGTTAAAGAATCACCATCACTTTGGGAAAATCCTTTCTCTTCCACAACATCTTGGAAGCCCTGTGCTTAG
Predicted protein sequences of Glyma17g29875
>Glyma17g29875.1   sequence type=predicted peptide   gene model=Glyma17g29875   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWTTSFTPMTSPPHVPLPECHLPHLREQLWVQFEQCHRPQKRRSGRVLRCKEEVEEVATDLGVGGDRLRRVSDTGASDSSPLIPDNHLANDNEHDRHLSKDRDRHMCFFFTDDPMVSPHNSRISLVFTLLLLLVGLVSHFTIFNNLNAPYLCKKDGIVLHCPHVKESPSLWENPFSSTTSWKPCA*






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