Report for Sequence Feature Glyma17g29710
Feature Type: gene_model
Chromosome: Gm17
Start: 32495623
stop: 32496976
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g29710
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G12660 AT
Annotation by Michelle Graham. TAIR10: FASCICLIN-like arabinogalactan protein 14 precursor | chr3:4019060-4019827 FORWARD LENGTH=255
SoyBase E_val: 1.00E-34 ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0031225 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF02469 PFAM
Fasciclin domain
JGI ISS
UniRef100_B9GLR8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Fasciclin-like arabinogalactan protein family protein (Fragment) n=1 Tax=Populus trichocarpa RepID=B9GLR8_POPTR
SoyBase E_val: 5.00E-36 ISS
UniRef100_UPI000233F35A UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233F35A related cluster n=1 Tax=unknown RepID=UPI000233F35A
SoyBase E_val: 0 ISS
Expression Patterns of Glyma17g29710
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma17g29710
Paralog Evidence Comments
Glyma14g17200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g29710 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g202000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g29710
Coding sequences of Glyma17g29710
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g29710.1 sequence type=CDS gene model=Glyma17g29710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGTTTTCCACATTCAACAAATACCTAACCGAAACCAAGCTTGCAGACCAAATAAACAGCCGCAACACCATCACTGTCCTCGCCGTTGAAGACTCAGCCATGCATTCCATTGCTGCCAAGTCCCCAGAAGCCATTAAGGCCATCATTGGCACCCATGTCATCCTTGACTTCTTTGATGAGAAGAAGCTCATGGAAGCTCAAGCTAGTAGCCAACAGTTGACAACCCTATTCCAGGCTTCAGGCCTTGCTGTGAACCAACAAGGCTTCCTCAAGGTTGCACTTGTTGGTGAAGGCGAGATCGCCTTCGGGTCGGCTGCGAGCGATGCCCCAGCCGACGCCACCGAGCTCGTCAGGACCGTCACCAGTGAGCCCTACAATATCTCCATTCTCCAAGTCACCAAGCCTATCCTAGCCCCAGGTGTTGATTCACCAACCCCAGCCTCATCATCTGGTGCCCAACCCTCACAAGGAGCCAAGGCCCCCATTGCAGCACAAAGTGCCAAGGCACCAGTTACTGCACAAGAGGCTAAAACTCCTATGCCATCATCACAAGGTGTCAATGCGAAGGCACCCGTTCAGGCACAGGTTGCAAAGTCTCCTGTGCCAGCTCAGAGTGCCAAGGCACCAACTCCTTTGGAGAATGCGGCCTCGCCTTCACCTGCTAGTGAAAGCGTTGCCGAGTCTCCAGAGGTTGCTGCTGAAGCCCCAGCAACAAGCCCAGTTGGGGCTGAGGCTCCAGGTCCCTTGGCTGATGATGTTGCTCCGGCAGATGTTACTGCTAGCAGTGCTTCGACCACGAAGATGGGTTTGGTTGGGGCAGTGATGGCCTTTGCTTCCCTCTTCATTGTTCTGTAA
Predicted protein sequences of Glyma17g29710
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g29710.1 sequence type=predicted peptide gene model=Glyma17g29710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEFSTFNKYLTETKLADQINSRNTITVLAVEDSAMHSIAAKSPEAIKAIIGTHVILDFFDEKKLMEAQASSQQLTTLFQASGLAVNQQGFLKVALVGEGEIAFGSAASDAPADATELVRTVTSEPYNISILQVTKPILAPGVDSPTPASSSGAQPSQGAKAPIAAQSAKAPVTAQEAKTPMPSSQGVNAKAPVQAQVAKSPVPAQSAKAPTPLENAASPSPASESVAESPEVAAEAPATSPVGAEAPGPLADDVAPADVTASSASTTKMGLVGAVMAFASLFIVL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
