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Report for Sequence Feature Glyma17g29690

Feature Type:gene_model
Chromosome:Gm17
Start:32472767
stop:32475593
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g29690
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G31360AT Annotation by Michelle Graham. TAIR10: selenium binding | chr4:15221945-15223310 FORWARD LENGTH=186 SoyBaseE_val: 1.00E-37ISS
GO:0045454GO-bp Annotation by Michelle Graham. GO Biological Process: cell redox homeostasis SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008430GO-mf Annotation by Michelle Graham. GO Molecular Function: selenium binding SoyBaseN/AISS
UniRef100_Q9ZQ24UniRef Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Arabidopsis thaliana RepID=Q9ZQ24_ARATH SoyBaseE_val: 2.00E-31ISS
UniRef100_UPI000233F358UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233F358 related cluster n=1 Tax=unknown RepID=UPI000233F358 SoyBaseE_val: 1.00E-118ISS

Expression Patterns of Glyma17g29690
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g29690
ParalogEvidenceComments
Glyma14g17190 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g29690 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g201900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g29690
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g29690
>Glyma17g29690.1   sequence type=CDS   gene model=Glyma17g29690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCACCGGCGAAGCGCAAAGCGGAGGGAGCTGCGGCGGCGGCGGCGCCTATGAGAGTCACTCGTGCGGCGGCAGCGCGAGCCGCCGAGGTGGCTCCGCCGGCGTCGGAGGAGAAGAGGAAGGCGAAGAAGGCCAAAGTTGCTTCTAAGCAGCAGAAAAAGAAAGAAAAAGAAAGCGAAACTGTCGTTGAGAGTGAGAACAAAGTCGAAGAAGGAGACGCCTCTGAGAACGTTCTAGACGCTTCGAACAAAACCATCGTCGTTGAACACTGCAAGCAATGCAACTCATTCAAGACGAGGGCCAATCAGGTGAAAAAAGGACTAGAGAAGGCAGACATTGGAATCACTGTGATTCTGAACCCTGAGAAGCCAAGAAAAGGTTGTTTTGAAATACGGCAAGAAGGGAGCGGCAAAAAGTTCATCACTCTGTTGGATATGAAGCGTCCATTTAAAAGAATGAAGGATCTGGACATGGACAACGTCGTCTCGGATATCATTGATGAAATATCAAAGGCTAGTTGA
Predicted protein sequences of Glyma17g29690
>Glyma17g29690.1   sequence type=predicted peptide   gene model=Glyma17g29690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPPAKRKAEGAAAAAAPMRVTRAAAARAAEVAPPASEEKRKAKKAKVASKQQKKKEKESETVVESENKVEEGDASENVLDASNKTIVVEHCKQCNSFKTRANQVKKGLEKADIGITVILNPEKPRKGCFEIRQEGSGKKFITLLDMKRPFKRMKDLDMDNVVSDIIDEISKAS*






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