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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G19940 | AT | Annotation by Michelle Graham. TAIR10: Plastid-lipid associated protein PAP / fibrillin family protein | chr5:6739693-6740661 FORWARD LENGTH=239 | SoyBase | E_val: 1.00E-99 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0019344 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process | SoyBase | N/A | ISS |
| GO:0019684 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction | SoyBase | N/A | ISS |
| GO:0019761 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process | SoyBase | N/A | ISS |
| GO:0030003 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis | SoyBase | N/A | ISS |
| GO:0035304 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation | SoyBase | N/A | ISS |
| GO:0070838 | GO-bp | Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009534 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0005198 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural molecule activity | SoyBase | N/A | ISS |
| PF04755 | PFAM | PAP fibrillin | JGI | ISS | |
| UniRef100_B9SPQ4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Structural molecule, putative n=1 Tax=Ricinus communis RepID=B9SPQ4_RICCO | SoyBase | E_val: 6.00E-99 | ISS |
| UniRef100_I1MWI9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MWI9_SOYBN | SoyBase | E_val: 2.00E-169 | ISS |
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Glyma17g29660 not represented in the dataset |
Glyma17g29660 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g17100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g201600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g29660.2 sequence type=transcript gene model=Glyma17g29660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCATCACAAAACCCCAATACTTCTGCTCCATGTAAGACCCCAACTCGATTCTCATCACACGTGGCACGTGCGACGCTTCAGTATTATTTTTCCGTCATTGTCATGTTACGGCTTTGTGGATTCGCCATGGCTGCTACGGCTTCAGCTTCCGCTGCTTCTCTCTCCCTTCGCTCTTCTCCCTTCAAACTCAACCCTCCAAAACTCAACTCCGTTACGCTCCGTTTCCCTCACCTTAATCGCCGTTATAACAGCGCCTTCAGAGTCGTCGCCGCTTCCGTTTCCGTCTCCAACCCCAACGTGCAAACCGGCCCCGACGATCTCGTTGCTTCCATTCTCTCAAAGGTGGTGCAAACGGATGGAGGAGTATTGCTGAAGGAGGAAGAGCATAAAGAGGTGGCCGAAGTGGCTCAGGAACTGCAAAAGTATTGCGTGAGTGAGCCAGTGAAATGCCCTTTAATATTTGGAGAGTGGGATGTGGCATACTGTTCACGGCCAACATCACCAGGTGGTGGCTATAGGAGTGCAATTGGGCGCCTTTTCTTCAACACAAAGCAAATGGTTCAAGTTGTTGAAGCTCCTGATATTGTGAGAAACAAGGTCTCACTTTCTGTTTTAAGCTTTCTGGATGTGGAGGTTTCTCTGCAGGGAAAACTCAAGGCTCTGGATGGTGAATGGATCCAAGTTATATTTGAAGCACCTGAATTGAAGGTAGGATCATGGCAGGTCCAGTATGGTGGCCAGAGTGAAGTTAAACTCAGAATCACTTATGTTGATGAGAAAATCAGTGGCAAAAATAATTCTTTTTGGGGGGTGCCTTTGTAGCTGAAATTTGGTCAGGGGATGAAGAATGTGGGATGGTTTCCAACCTCTAGCCTTGGTGGGGCTGTGAACACTATCTGAGACTCAACTTAAGTGTCAAGGACATTAAAATTAAGTTTAATTATACTTTCAGGCTCTATTTGAAAAAAAAACTAGTGTATGGCAGATAGTGGATGAGTTTATAGTTAATACTTGATAAATTAGCTAATTGAATTTGTAGTGTTTGATAAAATTAGTTAAACTATCTGATAAATATAAGATGACGTGCATATTTTATA
>Glyma17g29660.1 sequence type=CDS gene model=Glyma17g29660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTACGGCTTTGTGGATTCGCCATGGCTGCTACGGCTTCAGCTTCCGCTGCTTCTCTCTCCCTTCGCTCTTCTCCCTTCAAACTCAACCCTCCAAAACTCAACTCCGTTACGCTCCGTTTCCCTCACCTTAATCGCCGTTATAACAGCGCCTTCAGAGTCGTCGCCGCTTCCGTTTCCGTCTCCAACCCCAACGTGCAAACCGGCCCCGACGATCTCGTTGCTTCCATTCTCTCAAAGGTGGTGCAAACGGATGGAGGAGTATTGCTGAAGGAGGAAGAGCATAAAGAGGTGGCCGAAGTGGCTCAGGAACTGCAAAAGTATTGCGTGAGTGAGCCAGTGAAATGCCCTTTAATATTTGGAGAGTGGGATGTGGCATACTGTTCACGGCCAACATCACCAGGTGGTGGCTATAGGAGTGCAATTGGGCGCCTTTTCTTCAACACAAAGCAAATGGTTCAAGTTGTTGAAGCTCCTGATATTGTGAGAAACAAGGTCTCACTTTCTGTTTTAAGCTTTCTGGATGTGGAGGTTTCTCTGCAGGGAAAACTCAAGGCTCTGGATGGTGAATGGATCCAAGTTATATTTGAAGCACCTGAATTGAAGGTAGGATCATGGCAGGTCCAGTATGGTGGCCAGAGTGAAGTTAAACTCAGAATCACTTATGTTGATGAGAAAATCAGGTTAGGATTGGGTTCCAGAGGTTCCCTGTTTGTTTTTCAAAGAATATGA >Glyma17g29660.2 sequence type=CDS gene model=Glyma17g29660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTACGGCTTTGTGGATTCGCCATGGCTGCTACGGCTTCAGCTTCCGCTGCTTCTCTCTCCCTTCGCTCTTCTCCCTTCAAACTCAACCCTCCAAAACTCAACTCCGTTACGCTCCGTTTCCCTCACCTTAATCGCCGTTATAACAGCGCCTTCAGAGTCGTCGCCGCTTCCGTTTCCGTCTCCAACCCCAACGTGCAAACCGGCCCCGACGATCTCGTTGCTTCCATTCTCTCAAAGGTGGTGCAAACGGATGGAGGAGTATTGCTGAAGGAGGAAGAGCATAAAGAGGTGGCCGAAGTGGCTCAGGAACTGCAAAAGTATTGCGTGAGTGAGCCAGTGAAATGCCCTTTAATATTTGGAGAGTGGGATGTGGCATACTGTTCACGGCCAACATCACCAGGTGGTGGCTATAGGAGTGCAATTGGGCGCCTTTTCTTCAACACAAAGCAAATGGTTCAAGTTGTTGAAGCTCCTGATATTGTGAGAAACAAGGTCTCACTTTCTGTTTTAAGCTTTCTGGATGTGGAGGTTTCTCTGCAGGGAAAACTCAAGGCTCTGGATGGTGAATGGATCCAAGTTATATTTGAAGCACCTGAATTGAAGGTAGGATCATGGCAGGTCCAGTATGGTGGCCAGAGTGAAGTTAAACTCAGAATCACTTATGTTGATGAGAAAATCAGTGGCAAAAATAATTCTTTTTGGGGGGTGCCTTTGTAG
>Glyma17g29660.1 sequence type=predicted peptide gene model=Glyma17g29660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLRLCGFAMAATASASAASLSLRSSPFKLNPPKLNSVTLRFPHLNRRYNSAFRVVAASVSVSNPNVQTGPDDLVASILSKVVQTDGGVLLKEEEHKEVAEVAQELQKYCVSEPVKCPLIFGEWDVAYCSRPTSPGGGYRSAIGRLFFNTKQMVQVVEAPDIVRNKVSLSVLSFLDVEVSLQGKLKALDGEWIQVIFEAPELKVGSWQVQYGGQSEVKLRITYVDEKIRLGLGSRGSLFVFQRI* >Glyma17g29660.2 sequence type=predicted peptide gene model=Glyma17g29660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLRLCGFAMAATASASAASLSLRSSPFKLNPPKLNSVTLRFPHLNRRYNSAFRVVAASVSVSNPNVQTGPDDLVASILSKVVQTDGGVLLKEEEHKEVAEVAQELQKYCVSEPVKCPLIFGEWDVAYCSRPTSPGGGYRSAIGRLFFNTKQMVQVVEAPDIVRNKVSLSVLSFLDVEVSLQGKLKALDGEWIQVIFEAPELKVGSWQVQYGGQSEVKLRITYVDEKISGKNNSFWGVPL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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