Glyma17g29651 - SoyBase

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Report for Sequence Feature Glyma17g29651

Feature Type:	gene_model
Chromosome:	Gm17
Start:	32351447
stop:	32356243
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g29651

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G10620	AT	Annotation by Michelle Graham. TAIR10: methyltransferases \| chr5:3355466-3356615 REVERSE LENGTH=193	SoyBase	E_val: 2.00E-90	ISS
GO:0006364	GO-bp	Annotation by Michelle Graham. GO Biological Process: rRNA processing	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0008168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity	SoyBase	N/A	ISS
PF02590	PFAM	Predicted SPOUT methyltransferase	JGI		ISS
UniRef100_I1M9Q9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M9Q9_SOYBN	SoyBase	E_val: 2.00E-123	ISS
UniRef100_Q01KE0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: OSIGBa0113I13.7 protein n=4 Tax=Oryza sativa RepID=Q01KE0_ORYSA	SoyBase	E_val: 7.00E-77	ISS

Expression Patterns of Glyma17g29651

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g29651 not represented in the dataset	Glyma17g29651 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g29651

Paralog	Evidence	Comments
Glyma14g17090	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g29651 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g201400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g29651

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g29651

Limit To All Plant Sequences

>Glyma17g29651.2   sequence type=transcript   gene model=Glyma17g29651   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTTTTTATCTCCTTCGTCCATTTTCCATTCCAATTCCAGTTTCCGCCTTTTGTGTTTCTCTTCCGAATGGGTACTGCAATCCAACTCTGCGTCACTTCAAATCCTGCTCAAGAGAGCACTTCCTATACGTATATTGTCAGTGGGGAAGAAGCGATCACGTGGACTGCAACTCATGGTTGATGAGTATGCTGATAAGCTCAGGTACTATTGCAATGTTGAGGATGCTCAAATACGGCCAAATCCTCGAAATGCACGTGACCAAAGGGCTCAGGTTGATGCCGAAGATGAGGCAGTGATGAACCTTATAAGGTCTGATGATTGGGTTGTGATGTTGGATGAACGTGGGCAAGACATTGAATCTGAGCAAATGGCAGAGTTGGTGGGTGATGCAGGAAATACTGGTGCTTCACGATTATCCTTCTGTATTGGTGGGCCCTATGGTCATGGAAGAAAAATGCGGCAACGAGCTAACTTATCAATCAAGTTATCTTCACTGGTCTTGAATCATCAAATAGCATTACTTGTGCTCATGGAACAGCTTTACAGGTCGTGGACAATTTTAAAAGGACAAAAGTATCATCATTAGATATCCTTTCTTATTTTGTTTATCTATATGTCTTTTATGATCAGTTGAGCGTCCCTCTGAACCTTCTATCTCTTGTCTTCTATTCAACATTATTTTCTTCTTTTGAATTTTGGGGTGAACTGATGAGTAGTCTTGTGTATAGTTGAATTTGATTATTTGAGTGTATATATGAAGTGACGTGAAAAATCTTGAGGTGGTTGTTTTTCTTGTTTAATTTGTTCCATTATTAATGAGGAAGGAAGGGTGTTTCATTTAGAATAA

>Glyma17g29651.3   sequence type=transcript   gene model=Glyma17g29651   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTTTTTATCTCCTTCGTCCATTTTCCATTCCAATTCCAGTTTCCGCCTTTTGTGTTTCTCTTCCGAATGGGTACTGCAATCCAACTCTGCGTCACTTCAAATCCTGCTCAAGTTGTGAACTGTGTAGAGAGCACTTCCTATACGTATATTGTCAGTGGGGAAGAAGCGATCACGTGGACTGCAACTCATGGTTGATGAGTATGCTGATAAGCTCAGGTACTATTGCAATGTTGAGGATGCTCAAATACGGCCAAATCCTCGAAATGCACGTGACCAAAGGGCTCAGGTTGATGCCGAAGATGAGGCAGTGATGAACCTTATAAGGTCTGATGATTGGGTTGTGATGTTGGATGAACGTGGGCAAGACATTGAATCTGAGCAAATGGCAGAGTTGGTGGGTGATGCAGGAAATACTGGTGCTTCACGATTATCCTTCTGTATTGGTGGGCCCTATGGTCATGGAAGAAAAATGCGGCAACGAGCTAACTTATCAATCAAGTTATCTTCACTGGTCTTGAATCATCAAATAGCATTACTTGTGCTCATGGAACAGCTTTACAGGTCGTGGACAATTTTAAAAGGACAAAAGTATCATCATTAGATATCCTTTCTTATTTTGTTTATCTATATGTCTTTTATGATCAGTTGAGCGTCCCTCTGAACCTTCTATCTCTTGTCTTCTATTCAACATTATTTTCTTCTTTTGAATTTTGGGGTGAACTGATGAGTAGTCTTGTGTATAGTTGAATTTGATTATTTGAGTGTATATATGAAGTGACGTGAAAAATCTTGAGGTGGTTGTTTTTCTTGTTTAATTTGTTCCATTATTAATGAGGAAGGAAGGGTGTTTCATTTAGAATAA

>Glyma17g29651.4   sequence type=transcript   gene model=Glyma17g29651   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTTTTTATCTCCTTCGTCCATTTTCCATTCCAATTCCAGTTTCCGCCTTTTGTGTTTCTCTTCCGAATGGGTACTGCAATCCAACTCTGCGTCACTTCAAATCCTGCTCAAGGTAGAAAATGCAAGTACGAAGGTCAATCAGTGTTGTGAACTGTGTAGAGAGCACTTCCTATACGTATATTGTCAGTGGGGAAGAAGCGATCACGTGGACTGCAACTCATGGTTGATGAGTATGCTGATAAGCTCAGGTACTATTGCAATGTTGAGGATGCTCAAATACGGCCAAATCCTCGAAATGCACGTGACCAAAGGGCTCAGGTTGATGCCGAAGATGAGGCAGTGATGAACCTTATAAGGTCTGATGATTGGGTTGTGATGTTGGATGAACGTGGGCAAGACATTGAATCTGAGCAAATGGCAGAGTTGGTGGGTGATGCAGGAAATACTGGTGCTTCACGATTATCCTTCTGTATTGGTGGGCCCTATGGTCATGGAAGAAAAATGCGGCAACGAGCTAACTTATCAATCAAGTTATCTTCACTGGTCTTGAATCATCAAATAGCATTACTTGTGCTCATGGAACAGCTTTACAGGTCGTGGACAATTTTAAAAGGACAAAAGTATCATCATTAGATATCCTTTCTTATTTTGTTTATCTATATGTCTTTTATGATCAGTTGAGCGTCCCTCTGAACCTTCTATCTCTTGTCTTCTATTCAACATTATTTTCTTCTTTTGAATTTTGGGGTGAACTGATGAGTAGTCTTGTGTATAGTTGAATTTGATTATTTGAGTGTATATATGAAGTGACGTGAAAAATCTTGAGGTGGTTGTTTTTCTTGTTTAATTTGTTCCATTATTAATGAGGAAGGAAGGGTGTTTCATTTAGAATAA

Coding sequences of Glyma17g29651

Limit To All Plant Sequences

>Glyma17g29651.1   sequence type=CDS   gene model=Glyma17g29651   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTTTATCTCCTTCGTCCATTTTCCATTCCAATTCCAGTTTCCGCCTTTTGTGTTTCTCTTCCGAATGGGTACTGCAATCCAACTCTGCGTCACTTCAAATCCTGCTCAAGGTAGAAAATGCAAGTACGAAGGTCAATCAGTGAGAGCACTTCCTATACGTATATTGTCAGTGGGGAAGAAGCGATCACGTGGACTGCAACTCATGGTTGATGAGTATGCTGATAAGCTCAGGTACTATTGCAATGTTGAGGATGCTCAAATACGGCCAAATCCTCGAAATGCACGTGACCAAAGGGCTCAGGTTGATGCCGAAGATGAGGCAGTGATGAACCTTATAAGGTCTGATGATTGGGTTGTGATGTTGGATGAACGTGGGCAAGACATTGAATCTGAGCAAATGGCAGAGTTGGTGGGTGATGCAGGAAATACTGGTGCTTCACGATTATCCTTCTGTATTGGTGGGCCCTATGGTCATGGAAGAAAAATGCGGCAACGAGCTAACTTATCAATCAAGTTATCTTCACTGGTCTTGAATCATCAAATAGCATTACTTGTGCTCATGGAACAGCTTTACAGGTCGTGGACAATTTTAAAAGGACAAAAGTATCATCATTAG

>Glyma17g29651.2   sequence type=CDS   gene model=Glyma17g29651   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTTTTTATCTCCTTCGTCCATTTTCCATTCCAATTCCAGTTTCCGCCTTTTGTGTTTCTCTTCCGAATGGGTACTGCAATCCAACTCTGCGTCACTTCAAATCCTGCTCAAGAGAGCACTTCCTATACGTATATTGTCAGTGGGGAAGAAGCGATCACGTGGACTGCAACTCATGGTTGATGAGTATGCTGATAAGCTCAGGTACTATTGCAATGTTGAGGATGCTCAAATACGGCCAAATCCTCGAAATGCACGTGACCAAAGGGCTCAGGTTGATGCCGAAGATGAGGCAGTGATGAACCTTATAAGGTCTGATGATTGGGTTGTGATGTTGGATGAACGTGGGCAAGACATTGAATCTGAGCAAATGGCAGAGTTGGTGGGTGATGCAGGAAATACTGGTGCTTCACGATTATCCTTCTGTATTGGTGGGCCCTATGGTCATGGAAGAAAAATGCGGCAACGAGCTAACTTATCAATCAAGTTATCTTCACTGGTCTTGAATCATCAAATAGCATTACTTGTGCTCATGGAACAGCTTTACAGGTCGTGGACAATTTTAAAAGGACAAAAGTATCATCATTAG

>Glyma17g29651.3   sequence type=CDS   gene model=Glyma17g29651   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGATGAGTATGCTGATAAGCTCAGGTACTATTGCAATGTTGAGGATGCTCAAATACGGCCAAATCCTCGAAATGCACGTGACCAAAGGGCTCAGGTTGATGCCGAAGATGAGGCAGTGATGAACCTTATAAGGTCTGATGATTGGGTTGTGATGTTGGATGAACGTGGGCAAGACATTGAATCTGAGCAAATGGCAGAGTTGGTGGGTGATGCAGGAAATACTGGTGCTTCACGATTATCCTTCTGTATTGGTGGGCCCTATGGTCATGGAAGAAAAATGCGGCAACGAGCTAACTTATCAATCAAGTTATCTTCACTGGTCTTGAATCATCAAATAGCATTACTTGTGCTCATGGAACAGCTTTACAGGTCGTGGACAATTTTAAAAGGACAAAAGTATCATCATTAG

>Glyma17g29651.4   sequence type=CDS   gene model=Glyma17g29651   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGATGAGTATGCTGATAAGCTCAGGTACTATTGCAATGTTGAGGATGCTCAAATACGGCCAAATCCTCGAAATGCACGTGACCAAAGGGCTCAGGTTGATGCCGAAGATGAGGCAGTGATGAACCTTATAAGGTCTGATGATTGGGTTGTGATGTTGGATGAACGTGGGCAAGACATTGAATCTGAGCAAATGGCAGAGTTGGTGGGTGATGCAGGAAATACTGGTGCTTCACGATTATCCTTCTGTATTGGTGGGCCCTATGGTCATGGAAGAAAAATGCGGCAACGAGCTAACTTATCAATCAAGTTATCTTCACTGGTCTTGAATCATCAAATAGCATTACTTGTGCTCATGGAACAGCTTTACAGGTCGTGGACAATTTTAAAAGGACAAAAGTATCATCATTAG

Predicted protein sequences of Glyma17g29651

Limit To All Plant Sequences

>Glyma17g29651.1   sequence type=predicted peptide   gene model=Glyma17g29651   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
FFISFVHFPFQFQFPPFVFLFRMGTAIQLCVTSNPAQGRKCKYEGQSVRALPIRILSVGKKRSRGLQLMVDEYADKLRYYCNVEDAQIRPNPRNARDQRAQVDAEDEAVMNLIRSDDWVVMLDERGQDIESEQMAELVGDAGNTGASRLSFCIGGPYGHGRKMRQRANLSIKLSSLVLNHQIALLVLMEQLYRSWTILKGQKYHH*

>Glyma17g29651.2   sequence type=predicted peptide   gene model=Glyma17g29651   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
FFLSPSSIFHSNSSFRLLCFSSEWVLQSNSASLQILLKRALPIRILSVGKKRSRGLQLMVDEYADKLRYYCNVEDAQIRPNPRNARDQRAQVDAEDEAVMNLIRSDDWVVMLDERGQDIESEQMAELVGDAGNTGASRLSFCIGGPYGHGRKMRQRANLSIKLSSLVLNHQIALLVLMEQLYRSWTILKGQKYHH*

>Glyma17g29651.3   sequence type=predicted peptide   gene model=Glyma17g29651   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVDEYADKLRYYCNVEDAQIRPNPRNARDQRAQVDAEDEAVMNLIRSDDWVVMLDERGQDIESEQMAELVGDAGNTGASRLSFCIGGPYGHGRKMRQRANLSIKLSSLVLNHQIALLVLMEQLYRSWTILKGQKYHH*

>Glyma17g29651.4   sequence type=predicted peptide   gene model=Glyma17g29651   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVDEYADKLRYYCNVEDAQIRPNPRNARDQRAQVDAEDEAVMNLIRSDDWVVMLDERGQDIESEQMAELVGDAGNTGASRLSFCIGGPYGHGRKMRQRANLSIKLSSLVLNHQIALLVLMEQLYRSWTILKGQKYHH*

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