SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G45330 | AT | Annotation by Michelle Graham. TAIR10: RNA 2'-phosphotransferase, Tpt1 / KptA family | chr2:18686340-18687874 FORWARD LENGTH=286 | SoyBase | E_val: 4.00E-113 | ISS |
| GO:0006388 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tRNA splicing, via endonucleolytic cleavage and ligation | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0000215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: tRNA 2'-phosphotransferase activity | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| KOG2278 | KOG | RNA:NAD 2'-phosphotransferase TPT1 | JGI | ISS | |
| PTHR12684 | Panther | PUTATIVE PHOSPHOTRANSFERASE | JGI | ISS | |
| PF01885 | PFAM | RNA 2'-phosphotransferase, Tpt1 / KptA family | JGI | ISS | |
| PF02798 | PFAM | Glutathione S-transferase, N-terminal domain | JGI | ISS | |
| UniRef100_C6TCS0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TCS0_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_G7JDD5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: tRNA 2'-phosphotransferase n=1 Tax=Medicago truncatula RepID=G7JDD5_MEDTR | SoyBase | E_val: 2.00E-128 | ISS |
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Glyma17g29414 not represented in the dataset |
Glyma17g29414 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g199600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g29414.2 sequence type=transcript gene model=Glyma17g29414 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCTTGTTCGCAAAAGATAATAATAATAATAATTTGAATAAAAAGAAAATAGGGTGATGAGTGGGTGCGTAGACATCGAACAAAGATGAAGCTGAAGGTATATGCGGACCGCATGTCCCAACCATCCCGTGCGATTCTCATATTTTACAAAGTGAATGGAATAGATTTTGAGGATGTCAAAGTCGATTTATCCCAACATCACCAGCTATCTCCCCAATTCCGAGTGATTAACCCTTTAATGAAAGTCCCTGCTGTTGTTGATGGAAGGTTCAAACTATTTGAGAGCACTGGCAGAGGAAAGACTTTTGATATGAGAAACGATAGAGAGAGAACAACAGGGTGTGGAGGTGGGAGTGGCTCAGGAAAGGACAAAATTGATTCTCTTAGTAGGCTCCTGACACGAATTTTACGGCATATGGCATCTGAATTGAATTTGAATATGCGGAGTGATGGTTATGTAAAAGTTAATGATTTGCTAAAGCTGAATCTGAAGACATTTGCTAATATTCCACTGAGATCGCACACTATTGATCATATTAGGGAGGCTGTTCGAAAAGATAATAAGCAGCGGTTTAGCCTCTTAGAAGAGAATGGGGAGCTACTAATACGTGCAAACCAAGGCCACACAGTAAAGGTCGTTGAAACTGAAAGTTTGTTGAAACCAATCCTTTCCGCCAAAGAATTTCCAGTTTGTTTGCATGGAACCTACAGAAAGAACCTAGAATCAATTCTAGGATCTGGTCTGAAGCGCATGAAGAGATTGCATGTTCATTTCTCTTGTGGTTTACCAACAGATGGAGAAGTAATTAGTGGTATGAGGCAGGATGTCAATGTTCTGATCTTTCTGGACGTTAGAAAAGCATTAGAAGAAAGTATAAAGCTTTACATTTCTGACAACAAGGTGATCTTGACGGAAGGTTTTGATGGTGTTGTTCCTCCGAAGTATTTTGAAAGGATAGAATCATGGCCGAGCAGACAGCCCATTTCTTTTTAAAGTTATTTTACAATTTTGCTTTTAGGATCACAATACGTTGAGGATTATTTAAATAAAATAATATGAAAAAGATATAATATATTTTAAATAATAAAACATTTCAAAAATATATAACATATTAAATAAAAACATAAAAAATATACAACATATTAAATAAAATTGATAATAAGTAAAATTAAAATTATT
>Glyma17g29414.1 sequence type=CDS gene model=Glyma17g29414 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGCTGAAGGTATATGCGGACCGCATGTCCCAACCATCCCGTGCGATTCTCATATTTTACAAAGTGAATGGAATAGATTTTGAGGATGTCAAAGTCGATTTATCCCAACATCACCAGCTATCTCCCCAATTCCGAGTGATTAACCCTTTAATGAAAGTCCCTGCTGTTGTTGATGGAAGGTTCAAACTATTTGAGAGACATAGATTTTGTGCAATGGCTGAAGAGAGACAAGTCATCGGCTTCCACACTGGTGATGCGTGGAAGGGCAACTCTAGAATGCAAAAGACTCCAAAAAACTGCACTGGCAGAGGAAAGACTTTTGATATGAGAAACGATAGAGAGAGAACAACAGGGTGTGGAGGTGGGAGTGGCTCAGGAAAGGACAAAATTGATTCTCTTAGTAGGCTCCTGACACGAATTTTACGGCATATGGCATCTGAATTGAATTTGAATATGCGGAGTGATGGTTATGTAAAAGTTAATGATTTGCTAAAGCTGAATCTGAAGACATTTGCTAATATTCCACTGAGATCGCACACTATTGATCATATTAGGGAGGCTGTTCGAAAAGATAATAAGCAGCGGTTTAGCCTCTTAGAAGAGAATGGGGAGCTACTAATACGTGCAAACCAAGGCCACACAGTAAAGGTCGTTGAAACTGAAAGTTTGTTGAAACCAATCCTTTCCGCCAAAGAATTTCCAGTTTGTTTGCATGGAACCTACAGAAAGAACCTAGAATCAATTCTAGGATCTGGTCTGAAGCGCATGAAGAGATTGCATGTTCATTTCTCTTGTGGTTTACCAACAGATGGAGAAGTAATTAGTGGTATGAGGCAGGATGTCAATGTTCTGATCTTTCTGGACGTTAGAAAAGCATTAGAAGAAAGTATAAAGCTTTACATTTCTGACAACAAGGTGATCTTGACGGAAGGTTTTGATGGTGTTGTTCCTCCGAAGTATTTTGAAAGGATAGAATCATGGCCGAGCAGACAGCCCATTTCTTTTTAA >Glyma17g29414.2 sequence type=CDS gene model=Glyma17g29414 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGCTGAAGGTATATGCGGACCGCATGTCCCAACCATCCCGTGCGATTCTCATATTTTACAAAGTGAATGGAATAGATTTTGAGGATGTCAAAGTCGATTTATCCCAACATCACCAGCTATCTCCCCAATTCCGAGTGATTAACCCTTTAATGAAAGTCCCTGCTGTTGTTGATGGAAGGTTCAAACTATTTGAGAGCACTGGCAGAGGAAAGACTTTTGATATGAGAAACGATAGAGAGAGAACAACAGGGTGTGGAGGTGGGAGTGGCTCAGGAAAGGACAAAATTGATTCTCTTAGTAGGCTCCTGACACGAATTTTACGGCATATGGCATCTGAATTGAATTTGAATATGCGGAGTGATGGTTATGTAAAAGTTAATGATTTGCTAAAGCTGAATCTGAAGACATTTGCTAATATTCCACTGAGATCGCACACTATTGATCATATTAGGGAGGCTGTTCGAAAAGATAATAAGCAGCGGTTTAGCCTCTTAGAAGAGAATGGGGAGCTACTAATACGTGCAAACCAAGGCCACACAGTAAAGGTCGTTGAAACTGAAAGTTTGTTGAAACCAATCCTTTCCGCCAAAGAATTTCCAGTTTGTTTGCATGGAACCTACAGAAAGAACCTAGAATCAATTCTAGGATCTGGTCTGAAGCGCATGAAGAGATTGCATGTTCATTTCTCTTGTGGTTTACCAACAGATGGAGAAGTAATTAGTGGTATGAGGCAGGATGTCAATGTTCTGATCTTTCTGGACGTTAGAAAAGCATTAGAAGAAAGTATAAAGCTTTACATTTCTGACAACAAGGTGATCTTGACGGAAGGTTTTGATGGTGTTGTTCCTCCGAAGTATTTTGAAAGGATAGAATCATGGCCGAGCAGACAGCCCATTTCTTTTTAA
>Glyma17g29414.1 sequence type=predicted peptide gene model=Glyma17g29414 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKLKVYADRMSQPSRAILIFYKVNGIDFEDVKVDLSQHHQLSPQFRVINPLMKVPAVVDGRFKLFERHRFCAMAEERQVIGFHTGDAWKGNSRMQKTPKNCTGRGKTFDMRNDRERTTGCGGGSGSGKDKIDSLSRLLTRILRHMASELNLNMRSDGYVKVNDLLKLNLKTFANIPLRSHTIDHIREAVRKDNKQRFSLLEENGELLIRANQGHTVKVVETESLLKPILSAKEFPVCLHGTYRKNLESILGSGLKRMKRLHVHFSCGLPTDGEVISGMRQDVNVLIFLDVRKALEESIKLYISDNKVILTEGFDGVVPPKYFERIESWPSRQPISF* >Glyma17g29414.2 sequence type=predicted peptide gene model=Glyma17g29414 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKLKVYADRMSQPSRAILIFYKVNGIDFEDVKVDLSQHHQLSPQFRVINPLMKVPAVVDGRFKLFESTGRGKTFDMRNDRERTTGCGGGSGSGKDKIDSLSRLLTRILRHMASELNLNMRSDGYVKVNDLLKLNLKTFANIPLRSHTIDHIREAVRKDNKQRFSLLEENGELLIRANQGHTVKVVETESLLKPILSAKEFPVCLHGTYRKNLESILGSGLKRMKRLHVHFSCGLPTDGEVISGMRQDVNVLIFLDVRKALEESIKLYISDNKVILTEGFDGVVPPKYFERIESWPSRQPISF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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