SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G31210 | AT | Annotation by Michelle Graham. TAIR10: DNA topoisomerase, type IA, core | chr4:15165280-15172534 FORWARD LENGTH=1284 | SoyBase | E_val: 1.00E-175 | ISS |
| GO:0006265 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA topological change | SoyBase | N/A | ISS |
| GO:0006268 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA unwinding involved in replication | SoyBase | N/A | ISS |
| GO:0009220 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0005694 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chromosome | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003916 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA topoisomerase activity | SoyBase | N/A | ISS |
| GO:0003917 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA topoisomerase type I activity | SoyBase | N/A | ISS |
| PTHR11390 | Panther | PROKARYOTIC DNA TOPOISOMERASE | JGI | ISS | |
| PF01131 | PFAM | DNA topoisomerase | JGI | ISS | |
| PF01396 | PFAM | Topoisomerase DNA binding C4 zinc finger | JGI | ISS | |
| UniRef100_F4JRX3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA topoisomerase n=1 Tax=Arabidopsis thaliana RepID=F4JRX3_ARATH | SoyBase | E_val: 7.00E-173 | ISS |
| UniRef100_UPI000233E830 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E830 related cluster n=1 Tax=unknown RepID=UPI000233E830 | SoyBase | E_val: 0 | ISS |
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Glyma17g29001 not represented in the dataset |
Glyma17g29001 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g196400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g29001.1 sequence type=CDS gene model=Glyma17g29001 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATACAACTTAATATTGGAAATCCTGATAAGTCTATTATATTACGGTCTTCCAGCTCAAGGGTTGAGTTTCCTGGATATCGGGCAGTTTTTACGGACATTGTTACTGAAGCTGTTCAAGATAAAGACAGTGATGAATTCAGCCGTGATCAAACATTTGGAGTACTAAATTCCTTGAAGACAGGGGATCCATTACATGTGGTTCAGACTGAACCTAATCAGCACCATACACAACCACCACCACGGTACTCTGAAGCATCATTGGTTAAGAAACTTGAGGAGCTTGGGATTGGAAGGCCATCAACATATGCATCCACAATAAAAGTTTTACAGGATAGAAACTATGTGACAGTAAAAAGTCGAGTTCTGTCTCCAGAGTTTCGTGGTTGCATGGTTTCAGCTTTTCTGTCGCATCATTTTTCAGAGGTCATGGACTACGGTTTTACTGCCGATATGGAAACCGAGCTGGATAATGTTTCTGGTGGATTAACTGAATGGAAAGGCCTCCTTAGAGACTATTGGACACGATTTAAATCATATTGTGAGCGTACATCTAATGTTCATATTCATCAGGTTGAGAAGATGTTGGAAAAAAAATTTGGCGATTATTTATTTGCTTCTCTCCCAGATCAGAGCCGGGTGTGTCCAAGTTGTATGGAAGGCACACTTATTTTTAAAGTAAGTAGATTTGGTGCTGGCTACTTTATAGGCTGTGATCAACATCCTAGGTGCAAGTACATTGCTAAAACATTATACGGTACAGAGGAGGAAGAGGATGCATCTCAGCCAAACAGTAGAGTAGAGGAACCAAAACTCCTAGGTGTTACTAGTGGTTCATATGAAAAGGTTCTTTTGAAAAGTGGGCCTTATGGAGTTTATGTTCAGCTCGGAGAAGACAGGAAGGGATATATACCTAAAAGAGCTTCTGTCTCTCATGTATGTCACATTTCCATTTTCAAAGCTTCAAGTAATTTTATTTTACTAATTTTTGGGCTATGGATGCCAGGTATTTCAATAATAGGTAATCATCCTAAGGATGGGCAGCCTGTCATATTAAAGCTTGCAAGAGCTGGGCTTTGTGTTAGACATCGGCGCACGGTTGCTTCTGTTCCTAAGAATGTGAAGCCAAGTGATGTTACCCTGGAAAAAGCACTTGAATATTTATCTGGTGATGATGTTAGACGATCTGGTCGTCCAAAAGGCAAATCTAAAGTTCAAGAAGTTGAAGTTATTGAAGCGTTTTAA
>Glyma17g29001.1 sequence type=predicted peptide gene model=Glyma17g29001 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high IQLNIGNPDKSIILRSSSSRVEFPGYRAVFTDIVTEAVQDKDSDEFSRDQTFGVLNSLKTGDPLHVVQTEPNQHHTQPPPRYSEASLVKKLEELGIGRPSTYASTIKVLQDRNYVTVKSRVLSPEFRGCMVSAFLSHHFSEVMDYGFTADMETELDNVSGGLTEWKGLLRDYWTRFKSYCERTSNVHIHQVEKMLEKKFGDYLFASLPDQSRVCPSCMEGTLIFKVSRFGAGYFIGCDQHPRCKYIAKTLYGTEEEEDASQPNSRVEEPKLLGVTSGSYEKVLLKSGPYGVYVQLGEDRKGYIPKRASVSHVCHISIFKASSNFILLIFGLWMPGISIIGNHPKDGQPVILKLARAGLCVRHRRTVASVPKNVKPSDVTLEKALEYLSGDDVRRSGRPKGKSKVQEVEVIEAF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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