SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G32910 | AT | Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Nuclear pore complex protein, Nucleoporin Nup85-like (InterPro:IPR011502); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:15881364-15885210 FORWARD LENGTH=716 | SoyBase | E_val: 0 | ISS |
| GO:0000085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0006406 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA export from nucleus | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0009845 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed germination | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0009933 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem structural organization | SoyBase | N/A | ISS |
| GO:0010048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vernalization response | SoyBase | N/A | ISS |
| GO:0010074 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maintenance of meristem identity | SoyBase | N/A | ISS |
| GO:0010162 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed dormancy process | SoyBase | N/A | ISS |
| GO:0010182 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0016571 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone methylation | SoyBase | N/A | ISS |
| GO:0016579 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein deubiquitination | SoyBase | N/A | ISS |
| GO:0019915 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid storage | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0050826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to freezing | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005635 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear envelope | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG2271 | KOG | Nuclear pore complex component (sc Nup85) | JGI | ISS | |
| PTHR13373 | Panther | FROUNT PROTEIN-RELATED | JGI | ISS | |
| PTHR13373:SF15 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF07575 | PFAM | Nup85 Nucleoporin | JGI | ISS | |
| UniRef100_A2A1E8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nucleoporin n=1 Tax=Lotus japonicus RepID=A2A1E8_LOTJA | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MWB9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MWB9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g27490 not represented in the dataset |
Glyma17g27490 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g193800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g27490.1 sequence type=CDS gene model=Glyma17g27490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCGTCGGACACCGTCGGCAACGTGGCTCTGGTCCCCTTCACCGGAGACTCGCCGCCAGCGGTATACCCTCTCCACCACGGCCTCGCTCCTCCGATTAGTCGTCTCTCCATCTCCTGGGCCCGCGGCAGCTCCCTCCGCCTCTCCCTTTTCGCCGGCGCCGCCGCCAAGGTCGTTGAAGTGAAGCTCGCCGGCGAAGATTCGGAGATCCCTGACGCTCACTGGCGCCGAATCGCGTACGGCTCCGTTGCGCCGTTTGCGCTGCTTCAGAGTCGGAGGAGCTCCCTTTCTGCTCTCTTGAAGACTCCTTCTCCCTATCGTTCGGATTGGTGGGAGCATGTGCTTCAGTATAGCAAAGAGATAGGTTCACTTCTTGGGGGGCCAAAGTTGCCTGCTAGTCCTATAATTGAGGACCCAAATGTAATTGCTAAGAGAGGTGAAGAGCCTACATCTTTGAAAGCTGCGTGGGAGTTAATTGAAATATTTTATGTGGACAAGCAATCTCAAGCATGGCTACCTGAAAGGCTTGTTGATTGGTTAGCTGATTATGCCAGCCTCTTTACTAGTACACATGAAACAATTCATGGCAAGCTTGTGGATTTTCAGAAAGAACTAGTTAACATACAGGTGATTGAGGAGGATCCCAGATATTGGGACTTGTTGTCATCTGCACTGTCAGTTGGTTGGCTTGATATTGTGGTGAAAATGCTGCGGTTGCATGGATCTTACCAATTAGATCAGCTCAGTAATCGGGAGTTGGAAAATGGACTTGTAGAGGCTGTTGCTGTTCTTATTTCCAAAATGCCCCGCATGCGTCCTGAATCTGTTGGAAAGTTAGGTGAATGCTATAAATCCAAACCTGACTTCATCAAGGCCTGGGAAAAATGGAGGTCACAAATTACAAAACTGGATTGCAGTCGATTCTGGATTCAATGTGATAATCAACAAACTCGTGAGGGCTTGAGAAACTTGCTACAAATTATGCTGGGTAACACTGAGAGTCTCTGCATGGCTACATGTTATTGGATTGAATTATATATTTCTCATTTCCTGTACATAAGGCCATTTACAATGGGAATAGAAAGCATGTATAATTTGGCCCAGAAATGCATCCAGTTGAAACCACGATCTAGTACCCATAGGTTGTCAGTACTTATGATTGGAATTCTTGAAGAAAATACCGAGGTTGTTTTAGCTGAGTGTTCCAGAGAATTTGGCCCTTGGTTGGTGGCACATGCCATAGAACTGTTGACTGCAGGGAGTGAGCAAGCAGAGATTCTTCTGCATGAGGAGCGTTATAACTTGGGGGGAATCAGCATAGTGGAACTACATCGGCTTGTATATGCTCAAATTCTATCGTCACATGCATTGACCTGGCAAATTGCTCCTATATATTTAACATCATGCATGAAGCAAGGAATGGGCTTGTTAGAGAATTTATTGTACAGGCAATCTGCTCAACATAATGATGTGTTGCTTAAGAACATTGAGATATGCCGTTTGTATGAGCTTGATCATATTAGTTCAAATATCATGAAGATTGCTGGAGTACATCACTGGAAGCATGGCCATAAGGGTGCTGGAGTATTCTGGCTTCAACAAGCCCAAGACGCAAGTTGTCTTGATAAGATTGCCCAACAGTTATTTGATTCTGTTGGAAAGTCTATATCTGATGAAAGCTTCAAGCAATGGGAAGGCATGATTGAACTATTGGGTTCTGAATCTAAGCCTGCTGGGGGACTTGAATTTTTGCACAAGTATAGGGATTTCAAGAAATCCCTTCAGAAGGTATCTAGTGGAAAATCAACTGATGCAGCAAGGCAAGCTGTAGGCTCCCTCATACTGCTTATGAAAAATCCATCTACTCCTCAGCGCTTTTGGTTGCCTCTTCTGTATGACTCGTTGAAGTTACTTAATTGGCAGGATTGCCCTCTTCTAAGTGTCTCTGAGACCAATCTTCTGCTGAACAAACTTCATGAGTTATCTCTGGCGAAGCTGCGACCGCACCATACTGAGCCTAGCTTACCTCCTGATGCACTAAGCTCTATTAGGTTGGCTCTAGCTACAAATCTTGGTCAAGCCATACTTGATGAATAG
>Glyma17g27490.1 sequence type=predicted peptide gene model=Glyma17g27490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPSDTVGNVALVPFTGDSPPAVYPLHHGLAPPISRLSISWARGSSLRLSLFAGAAAKVVEVKLAGEDSEIPDAHWRRIAYGSVAPFALLQSRRSSLSALLKTPSPYRSDWWEHVLQYSKEIGSLLGGPKLPASPIIEDPNVIAKRGEEPTSLKAAWELIEIFYVDKQSQAWLPERLVDWLADYASLFTSTHETIHGKLVDFQKELVNIQVIEEDPRYWDLLSSALSVGWLDIVVKMLRLHGSYQLDQLSNRELENGLVEAVAVLISKMPRMRPESVGKLGECYKSKPDFIKAWEKWRSQITKLDCSRFWIQCDNQQTREGLRNLLQIMLGNTESLCMATCYWIELYISHFLYIRPFTMGIESMYNLAQKCIQLKPRSSTHRLSVLMIGILEENTEVVLAECSREFGPWLVAHAIELLTAGSEQAEILLHEERYNLGGISIVELHRLVYAQILSSHALTWQIAPIYLTSCMKQGMGLLENLLYRQSAQHNDVLLKNIEICRLYELDHISSNIMKIAGVHHWKHGHKGAGVFWLQQAQDASCLDKIAQQLFDSVGKSISDESFKQWEGMIELLGSESKPAGGLEFLHKYRDFKKSLQKVSSGKSTDAARQAVGSLILLMKNPSTPQRFWLPLLYDSLKLLNWQDCPLLSVSETNLLLNKLHELSLAKLRPHHTEPSLPPDALSSIRLALATNLGQAILDE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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