SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G00660 | AT | Annotation by Michelle Graham. TAIR10: RNAhelicase-like 8 | chr4:274638-277438 FORWARD LENGTH=505 | SoyBase | E_val: 3.00E-168 | ISS |
| GO:0016032 | GO-bp | Annotation by Michelle Graham. GO Biological Process: viral reproduction | SoyBase | N/A | ISS |
| GO:0019048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: virus-host interaction | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0004386 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: helicase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008026 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity | SoyBase | N/A | ISS |
| KOG0327 | KOG | Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases | JGI | ISS | |
| PTHR24031 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24031:SF6 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00270 | PFAM | DEAD/DEAH box helicase | JGI | ISS | |
| PF00271 | PFAM | Helicase conserved C-terminal domain | JGI | ISS | |
| UniRef100_B9RDP2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9RDP2_RICCO | SoyBase | E_val: 5.00E-173 | ISS |
| UniRef100_I1MWB6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MWB6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g27250 not represented in the dataset |
Glyma17g27250 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
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| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g27250.2 sequence type=CDS gene model=Glyma17g27250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAACTAAAGGAAATGAGTTTGAGGATTACTTTTTGAAGCGTGAGTTGCTCATGGGAATATATGCGAAGGGTTTTGAAAGGCCTTCTCCCATCCAAGAAGAAAGCATTTCGATTGCTTTTACTGGTAGTGACATTCTTGCTAGGGCTAAGAACGGAACTGGCAAAACAGCTGCATTTTGCATTCCTGCATTGGATAAAATTGACCAGGACAATAATGTTAGTCAAGTGTGCAAAGAGCTTGGAAAGCACTTGAAAATTCAAGTTATGGTTACAACAGGTGGTACCAGCCTGAAAGATGATATAATGTTCTTATATCAACCAGTTCATTTACTAGTTGGAACTCTAGGAAGAATATTAGATCTTGCCAAGAAAGGTGTTTGTATTCTGAAAGATTGTGCTATGCTTGTTATGGATGAGGCCGATAAGCTTATGTCCCCAGAGTTTCAACCTTCTATAGAGCAGCTGATTCATTTTCTTCCTACAACTCGTCAAATCTTGATGTTTTTAGCAACATTTCCTGTTACTGTAAAGGATTTCAAGGATAGGTATCTTCGAAAACCTTATGTATTCGTGGAAGAGAGACAGAAAGTCCACTGTCTAAATACTCTTTTTTCTAAGCTGCAAATAACCCAGTCTATCATCTTCTGCAATTCAGTAAATCGGGTTGAACTCCTTGCCAAGAAAATCACAGAACTTGGGTATTCATGTATCTACATTCATGCAAAGATGTTGCAAGACCATCGTAACAGAGTGTTTCATGACTTCCGCAATGGCGCATGTCGAAATCTTGTTTGTACTGGT
>Glyma17g27250.2 sequence type=predicted peptide gene model=Glyma17g27250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKTKGNEFEDYFLKRELLMGIYAKGFERPSPIQEESISIAFTGSDILARAKNGTGKTAAFCIPALDKIDQDNNVSQVCKELGKHLKIQVMVTTGGTSLKDDIMFLYQPVHLLVGTLGRILDLAKKGVCILKDCAMLVMDEADKLMSPEFQPSIEQLIHFLPTTRQILMFLATFPVTVKDFKDRYLRKPYVFVEERQKVHCLNTLFSKLQITQSIIFCNSVNRVELLAKKITELGYSCIYIHAKMLQDHRNRVFHDFRNGACRNLVCTG
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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