Glyma17g27250 - SoyBase

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Report for Sequence Feature Glyma17g27250

Feature Type:	gene_model
Chromosome:	Gm17
Start:	28691821
stop:	28693848
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g27250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G00660	AT	Annotation by Michelle Graham. TAIR10: RNAhelicase-like 8 \| chr4:274638-277438 FORWARD LENGTH=505	SoyBase	E_val: 3.00E-168	ISS
GO:0016032	GO-bp	Annotation by Michelle Graham. GO Biological Process: viral reproduction	SoyBase	N/A	ISS
GO:0019048	GO-bp	Annotation by Michelle Graham. GO Biological Process: virus-host interaction	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0004386	GO-mf	Annotation by Michelle Graham. GO Molecular Function: helicase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008026	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity	SoyBase	N/A	ISS
KOG0327	KOG	Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases	JGI		ISS
PTHR24031	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24031:SF6	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00270	PFAM	DEAD/DEAH box helicase	JGI		ISS
PF00271	PFAM	Helicase conserved C-terminal domain	JGI		ISS
UniRef100_B9RDP2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9RDP2_RICCO	SoyBase	E_val: 5.00E-173	ISS
UniRef100_I1MWB6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MWB6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g27250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g27250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma17g27250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g27250

Limit To All Plant Sequences

>Glyma17g27250.2   sequence type=CDS   gene model=Glyma17g27250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAACTAAAGGAAATGAGTTTGAGGATTACTTTTTGAAGCGTGAGTTGCTCATGGGAATATATGCGAAGGGTTTTGAAAGGCCTTCTCCCATCCAAGAAGAAAGCATTTCGATTGCTTTTACTGGTAGTGACATTCTTGCTAGGGCTAAGAACGGAACTGGCAAAACAGCTGCATTTTGCATTCCTGCATTGGATAAAATTGACCAGGACAATAATGTTAGTCAAGTGTGCAAAGAGCTTGGAAAGCACTTGAAAATTCAAGTTATGGTTACAACAGGTGGTACCAGCCTGAAAGATGATATAATGTTCTTATATCAACCAGTTCATTTACTAGTTGGAACTCTAGGAAGAATATTAGATCTTGCCAAGAAAGGTGTTTGTATTCTGAAAGATTGTGCTATGCTTGTTATGGATGAGGCCGATAAGCTTATGTCCCCAGAGTTTCAACCTTCTATAGAGCAGCTGATTCATTTTCTTCCTACAACTCGTCAAATCTTGATGTTTTTAGCAACATTTCCTGTTACTGTAAAGGATTTCAAGGATAGGTATCTTCGAAAACCTTATGTATTCGTGGAAGAGAGACAGAAAGTCCACTGTCTAAATACTCTTTTTTCTAAGCTGCAAATAACCCAGTCTATCATCTTCTGCAATTCAGTAAATCGGGTTGAACTCCTTGCCAAGAAAATCACAGAACTTGGGTATTCATGTATCTACATTCATGCAAAGATGTTGCAAGACCATCGTAACAGAGTGTTTCATGACTTCCGCAATGGCGCATGTCGAAATCTTGTTTGTACTGGT

Predicted protein sequences of Glyma17g27250

Limit To All Plant Sequences

>Glyma17g27250.2   sequence type=predicted peptide   gene model=Glyma17g27250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKTKGNEFEDYFLKRELLMGIYAKGFERPSPIQEESISIAFTGSDILARAKNGTGKTAAFCIPALDKIDQDNNVSQVCKELGKHLKIQVMVTTGGTSLKDDIMFLYQPVHLLVGTLGRILDLAKKGVCILKDCAMLVMDEADKLMSPEFQPSIEQLIHFLPTTRQILMFLATFPVTVKDFKDRYLRKPYVFVEERQKVHCLNTLFSKLQITQSIIFCNSVNRVELLAKKITELGYSCIYIHAKMLQDHRNRVFHDFRNGACRNLVCTG

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