SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G03080 | AT | Annotation by Michelle Graham. TAIR10: kinase interacting (KIP1-like) family protein | chr1:731794-737332 REVERSE LENGTH=1733 | SoyBase | E_val: 7.00E-147 | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009963 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR13140 | Panther | MYOSIN | JGI | ISS | |
| PTHR13140:SF97 | Panther | MYOSIN K | JGI | ISS | |
| PF07765 | PFAM | KIP1-like protein | JGI | ISS | |
| UniRef100_G7IDL0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Centromere protein n=1 Tax=Medicago truncatula RepID=G7IDL0_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JF81 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JF81_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g27135 not represented in the dataset |
Glyma17g27135 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g27135.1 sequence type=CDS gene model=Glyma17g27135 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATGCCAAGGTGAAGCAAATGATTAAGCTTATTGAAGAAGATGCAGATTCCTTTGCCAGGAGAGTAGAAATGTATTATAAAAAACGCCCAGAGCTTATGAAAATGGTTGAAGAGTTTTCCAGGGCATATCGGGCATTGGCTGAGAGATATGATCATGCAACTGGAGTGATCTGCCACGCCCATAAGACCATGGCTGAAGCATTTCCTAATCAAGTTCCTATGATGCTGAGAGATGATTTACCTGCCGTTTCTCCTTCGGAGACTGAGCCACATACTCCAGAAATGCGACACCCAGATGCTTCTGCTCATTTCCATGCTATCAAAAGAAATGGTGGTTATATTGGTGAACCCGATTCTCCATTGAACAAAACCGGTTTGAAACAGCTCAATGATCTCTACATCCCTGGAGAACAAGAAAATCTTCCAAAGTTTGCTAGAAGGGGGCTCAATTTTTTTGAGATGCAGGAGGAGAGTAATCAGCAAAACCGTGGAAGCAACAACACTTTGTCTGAGTCTGAACGCGTGACAAAAGATGAGACAGAAATTTTGGCCTTGAAGAAAGCCATTGCCAAATTAGAAGATGAAAAGGAAGCTGGCTTACTTCAGTATCAACAGAGTTTGGAGAAAATTTCTAATCTCGAGTTAGAAGTGTCTACTGCACAAGAGAATTCTCGAAAACTCGATGAGCGAGCAAGTAAAGCTGAAGCTGAAGTTCAAGCCTTGAAGGAAGCCCAAATCAAATTACAAGCTGAAAGTGAAGCTAGTCTTCTTCAGTACCATGAATGCTGGGAGAAAATATCTAATCTGGAGAAAAATATTTCTTCTTTGCAAAAGGAAGCAGGAGAACTTAATGAACGAGCTACTAAAGCTGAAACTAAGTCTGAGTCCCTAAAGCAGGAACTTGCTAGAGTAGAAGCTGAAAAGGAAGCTACCCTTGTTCAATATAACCAGTGCTTGGAGACAATATCAAAACTGGAGGAGAGAATAAAAGAAGTTGAGGAGAATGCAAGAAGGATTAAGGAGCATGCCAATATAGCAGAAAAAGAAATCGAAGCTTTGGAATTACAAGTTACTAAACTTAATGAAGAAAAGGAAGATGCTGCTCTCCACTATCAGCAATGCATGGAGATAATTTCCAGTTTGGAGTATAAGCTCTCTTGTGCTGAAGAGGACGTGCATAGGCTAAATTCCAAGATAGTTGATGGGGTTGAAAAATTACAGAGTTCAAAACAAAAATGTCTTCTCTTGGAGACATCAAATCACACTCTGCAGTCAGAATTACAATCTTTGGCACAAAAAGTGGGGTCTCAAAGTGAAGAACTTAATGAGAAGCAGCAGGAATTGGGTAGACTTTGGGGTTGCATACAAGAGGAGAGACTGCGATTCATTGAGGCTGAACTGCTTTCCAAACTCTTCAGC
>Glyma17g27135.1 sequence type=predicted peptide gene model=Glyma17g27135 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDAKVKQMIKLIEEDADSFARRVEMYYKKRPELMKMVEEFSRAYRALAERYDHATGVICHAHKTMAEAFPNQVPMMLRDDLPAVSPSETEPHTPEMRHPDASAHFHAIKRNGGYIGEPDSPLNKTGLKQLNDLYIPGEQENLPKFARRGLNFFEMQEESNQQNRGSNNTLSESERVTKDETEILALKKAIAKLEDEKEAGLLQYQQSLEKISNLELEVSTAQENSRKLDERASKAEAEVQALKEAQIKLQAESEASLLQYHECWEKISNLEKNISSLQKEAGELNERATKAETKSESLKQELARVEAEKEATLVQYNQCLETISKLEERIKEVEENARRIKEHANIAEKEIEALELQVTKLNEEKEDAALHYQQCMEIISSLEYKLSCAEEDVHRLNSKIVDGVEKLQSSKQKCLLLETSNHTLQSELQSLAQKVGSQSEELNEKQQELGRLWGCIQEERLRFIEAELLSKLFS
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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