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Report for Sequence Feature Glyma17g26810

Feature Type:gene_model
Chromosome:Gm17
Start:28172026
stop:28173112
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g26810
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G25490AT Annotation by Michelle Graham. TAIR10: EIN3-binding F box protein 1 | chr2:10848018-10850275 REVERSE LENGTH=628 SoyBaseE_val: 2.00E-51ISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0009723GO-bp Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus SoyBaseN/AISS
GO:0010105GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of ethylene mediated signaling pathway SoyBaseN/AISS
GO:0042752GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of circadian rhythm SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0004842GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PTHR23125Panther F-BOX/LEUCINE RICH REPEAT PROTEIN JGI ISS
PTHR23125:SF106Panther EBF1 (EIN3-BINDING F BOX PROTEIN 1), UBIQUITIN-PRO JGI ISS
UniRef100_G7JE32UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ein3-binding f-box protein n=1 Tax=Medicago truncatula RepID=G7JE32_MEDTR SoyBaseE_val: 2.00E-79ISS
UniRef100_I1MU84UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MU84_SOYBN SoyBaseE_val: 5.00E-117ISS

Expression Patterns of Glyma17g26810
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g26810 not represented in the dataset
Glyma17g26810 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g26810 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g192600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g26810
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g26810
>Glyma17g26810.1   sequence type=CDS   gene model=Glyma17g26810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAAATTGTGAAGTGGCTACAACTTTAGGCAGTGGAGAAATCACATATTTTGTCCTCCTTCCACCCTTTTACAACATTGGCCATTATGGAAAGGCAATAACAAATCTAGTCCTCTCTGGTCTAAAAGATGTCACTGGAAGAGGGTTGTGCCTTTGCCAATGTTTCTTTGTTTCTGATAGTGGATCGGTAGCATTTGCCAAAGCTTCAGTATCTCTTGAGAACTTGCTGTTGGAGGAGTGCAACAGGTTCACTCTGACTAGGATTATTGTTGCCCTTGTAAACATCAAAATGAAGTTGAAATCTCTTTCCCTTGTGAAGTACATGGGAGTCAAAGATATCGATATGGAAGTGTCTATACTTTCTCCTTGCGAGTCTTTTCAATCTTTAGTCATTCAAAAGTGCCCTGGTTTTGGTAGTGCTAGCCTAGCCATGATTAATTGTGAGGCTGGACTTGTCAATGTAAACCTCACTGGTTTCTGGAACTTGACAAATAACATAGTCTCAACCTTGGCTTGGCTATATGGTGGAAAACTCGAAGTACTAAATCTTGATGGATGCGGGAAAATTACCAATGCAAGCTTGGTCGTAATTGCAAACAACTTCATAGTGCTTAATGATCTAGATGTGGCCAGTCTACCTAGCTTGCAAGTACTTTCCTTGTCTGGTTGTTTTGATATATCAAACAAGAGTGCTCCTTTCCTGATGAAATTGGGCCAGACCTTGCTGGGATTGAATCTTCAAAACTGCAATTCAATTGGCAGCAACATAATGGAGTTGCTAGTGGAGAAGTTATGGAGATGTGATATTCTGGCTTAA
Predicted protein sequences of Glyma17g26810
>Glyma17g26810.1   sequence type=predicted peptide   gene model=Glyma17g26810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKNCEVATTLGSGEITYFVLLPPFYNIGHYGKAITNLVLSGLKDVTGRGLCLCQCFFVSDSGSVAFAKASVSLENLLLEECNRFTLTRIIVALVNIKMKLKSLSLVKYMGVKDIDMEVSILSPCESFQSLVIQKCPGFGSASLAMINCEAGLVNVNLTGFWNLTNNIVSTLAWLYGGKLEVLNLDGCGKITNASLVVIANNFIVLNDLDVASLPSLQVLSLSGCFDISNKSAPFLMKLGQTLLGLNLQNCNSIGSNIMELLVEKLWRCDILA*






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