Glyma17g26600 - SoyBase

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Report for Sequence Feature Glyma17g26600

Feature Type:	gene_model
Chromosome:	Gm17
Start:	27886198
stop:	27890146
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g26600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G25940	AT	Annotation by Michelle Graham. TAIR10: early nodulin-related \| chr5:9054252-9055151 REVERSE LENGTH=115	SoyBase	E_val: 2.00E-23	ISS
GO:0009723	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF03386	PFAM	Early nodulin 93 ENOD93 protein	JGI		ISS
UniRef100_C6T1X7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T1X7_SOYBN	SoyBase	E_val: 2.00E-78	ISS
UniRef100_G7I281	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Enod93 protein n=1 Tax=Medicago truncatula RepID=G7I281_MEDTR	SoyBase	E_val: 2.00E-57	ISS

Expression Patterns of Glyma17g26600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g26600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g192100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g26600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g26600

Limit To All Plant Sequences

>Glyma17g26600.2   sequence type=transcript   gene model=Glyma17g26600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAATAAGCCATAATAAGGATTCGATTCGGAAAAGAAGAAAAGACATTCAACAAACAACGCAATGGGTATTCCGTCGGAACTGAGGGACATGTTGTTGCCCAACAAAAAGGGCGTCCTCGTTGCCTCTCCCGCAGAGGACAGGAAGACTTTGAGGTCCAAGCAATGCACTAGGGGTGTGCGAGCTGGATTCAAGGCTGCTTCCATTGCTGGTGTTGCCAGTGCTGTGCCTACATTGGCTGCAGTTCGTATGATTCCATGGGCAAAGGCAAACCTCAATTATACTGCTCAGGCACTTATCATATCTGCTGCATCCATCGCCTCATACTTCATCACTGCTGATAAAACTATCTTGGAGTGTGCAAGGAAAAATGCCAAGCTTGAAGATGCTTTGAGACACAATCAACAATAGTTGTCTTAGAAACTGAAAGAAGTACCCATCATTGTTCTTGGTGCATGATGGTGCTACTCGTTGTAATACAATCAATAAGCCTATTGCAAAGTGTTAATTTCTTGGTCTGTATTTCAAGGTGCATATTCTTAAACAATATGTTTGTTTTGTATGAGTCTGACAGAGTCGTTTGGAATTGCCACTCCCTATGGCTTCAGAAGTTGAAAATCTAAGGGCCCGTTTGGAGTGGTTGAGTTTTTGATTTTTGGGTTTTAGAGTTTAATTGTTGACTTGAATTGTTTTTCTAGCTTGGGTGACCATCTCTAATTGTCATCATAAAAAGAAGACTTGGAACCTACAAAATTGCATGAGCAGTTTCACAATCAAGCCTGATTCTAATTG

>Glyma17g26600.4   sequence type=transcript   gene model=Glyma17g26600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATTTTGTTTTATCCATCGTGGGCTGCTCGGCAAAGGCTCCTACTAGTACTACTACAGTACACATATAATAATAAATAAGCCTTCGATTTTCGATTTGATTCAGAGAACCTAAGAGATATAAATAAGCCATAATAAGGATTCGATTCGGAAAAGAAGAAAAGACATTCAACAAACAACGCAATGGGTATTCCGTCGGAACTGAGGGACATGTTGTTGCCCAACAAAAAGGGCGTCCTCGTTGCCTCTCCCGCAGAGGACAGGAAGACTTTGAGGTCCAAGCAATGCACTAGGGAAGGTGTGCGAGCTGGATTCAAGGCTGCTTCCATTGCTGGTGTTGCCAGTGCTGTGCCTACATTGGCTGCAGTTCGTATGATTCCATGGGCAAAGGCAAACCTCAATTATACTGCTCAGGCACTTATCATATCTGCTGCATCCATCGCCTCATACTTCATCACTGCTGATAAAACTATCTTGGAGTGTGCAAGGAAAAATGCCAAGCTTGAAGATGCTTTGAGACACAATCAACAATAGTTGTCTTAGAAACTGAAAGAAGTACCCATCATTGTTCTTGGTGCATGATGGTGCTACTCGTTGTAATACAATCAATAAGCCTATTGCAAAGTGTTAATTTCTTGGTCTGTATTTCAAGGTGCATATTCTTAAACAATATGTTTGTTTTGTATGAGTCTGACAGAGTCGTTTGGAATTGCCACTCCCTATGGCTTCAGAAGTTGAAAATCTAAGGGCCCGTTTGGAGTGGTTGAGTTTTTGATTTTTGGGTTTTAGAGTTTAATTGTTGACTTGAATTGTTTTTCTAGCTTGGGTGACCATCTCTAATTGTCATCATAAAAAGAAGACTTGGAACCTACAAAATTGCATGAGCAGTTTCACAATCAAGCCTGATTCTAATTGCATTTGTTATTTCACTCCTCATTACTATGCCCCAACATTGTCTGTTTAAAAAACCTACCTACAGCTTTCAAAG

Coding sequences of Glyma17g26600

Limit To All Plant Sequences

>Glyma17g26600.1   sequence type=CDS   gene model=Glyma17g26600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTATTCCGTCGGAACTGAGGGACATGTTGTTGCCCAACAAAAAGGGCGTCCTCGTTGCCTCTCCCGCAGAGGACAGGAAGACTTTGAGGTCCAAGCAATGCACTAGGGAAGGTGTGCGAGCTGGATTCAAGGCTGCTTCCATTGCTGGTGTTGCCAGTGCTGTGCCTACATTGGCTGCAGTTCGTATGATTCCATGGGCAAAGGCAAACCTCAATTATACTGCTCAGGCACTTATCATATCTGCTGCATCCATCGCCTCATACTTCATCACTGCTGATAAAACTATCTTGGAGTGTGCAAGGAAAAATGCCAAGCTTGAAGATGCTTTGAGACACAATCAACAATAG

>Glyma17g26600.2   sequence type=CDS   gene model=Glyma17g26600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTATTCCGTCGGAACTGAGGGACATGTTGTTGCCCAACAAAAAGGGCGTCCTCGTTGCCTCTCCCGCAGAGGACAGGAAGACTTTGAGGTCCAAGCAATGCACTAGGGGTGTGCGAGCTGGATTCAAGGCTGCTTCCATTGCTGGTGTTGCCAGTGCTGTGCCTACATTGGCTGCAGTTCGTATGATTCCATGGGCAAAGGCAAACCTCAATTATACTGCTCAGGCACTTATCATATCTGCTGCATCCATCGCCTCATACTTCATCACTGCTGATAAAACTATCTTGGAGTGTGCAAGGAAAAATGCCAAGCTTGAAGATGCTTTGAGACACAATCAACAATAG

>Glyma17g26600.4   sequence type=CDS   gene model=Glyma17g26600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTATTCCGTCGGAACTGAGGGACATGTTGTTGCCCAACAAAAAGGGCGTCCTCGTTGCCTCTCCCGCAGAGGACAGGAAGACTTTGAGGTCCAAGCAATGCACTAGGGAAGGTGTGCGAGCTGGATTCAAGGCTGCTTCCATTGCTGGTGTTGCCAGTGCTGTGCCTACATTGGCTGCAGTTCGTATGATTCCATGGGCAAAGGCAAACCTCAATTATACTGCTCAGGCACTTATCATATCTGCTGCATCCATCGCCTCATACTTCATCACTGCTGATAAAACTATCTTGGAGTGTGCAAGGAAAAATGCCAAGCTTGAAGATGCTTTGAGACACAATCAACAATAG

Predicted protein sequences of Glyma17g26600

Limit To All Plant Sequences

>Glyma17g26600.1   sequence type=predicted peptide   gene model=Glyma17g26600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGIPSELRDMLLPNKKGVLVASPAEDRKTLRSKQCTREGVRAGFKAASIAGVASAVPTLAAVRMIPWAKANLNYTAQALIISAASIASYFITADKTILECARKNAKLEDALRHNQQ*

>Glyma17g26600.2   sequence type=predicted peptide   gene model=Glyma17g26600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGIPSELRDMLLPNKKGVLVASPAEDRKTLRSKQCTRGVRAGFKAASIAGVASAVPTLAAVRMIPWAKANLNYTAQALIISAASIASYFITADKTILECARKNAKLEDALRHNQQ*

>Glyma17g26600.4   sequence type=predicted peptide   gene model=Glyma17g26600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGIPSELRDMLLPNKKGVLVASPAEDRKTLRSKQCTREGVRAGFKAASIAGVASAVPTLAAVRMIPWAKANLNYTAQALIISAASIASYFITADKTILECARKNAKLEDALRHNQQ*

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