Glyma17g26520 - SoyBase

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Report for Sequence Feature Glyma17g26520

Feature Type:	gene_model
Chromosome:	Gm17
Start:	27576328
stop:	27582133
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g26520

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G53550	AT	Annotation by Michelle Graham. TAIR10: YELLOW STRIPE like 3 \| chr5:21756081-21758776 FORWARD LENGTH=675	SoyBase	E_val: 0	ISS
GO:0003006	GO-bp	Annotation by Michelle Graham. GO Biological Process: developmental process involved in reproduction	SoyBase	N/A	ISS
GO:0006857	GO-bp	Annotation by Michelle Graham. GO Biological Process: oligopeptide transport	SoyBase	N/A	ISS
GO:0009624	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nematode	SoyBase	N/A	ISS
GO:0048316	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed development	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0051980	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron-nicotianamine transmembrane transporter activity	SoyBase	N/A	ISS
PF03169	PFAM	OPT oligopeptide transporter protein	JGI		ISS
UniRef100_G7J868	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: YSL transporter n=2 Tax=Medicago truncatula RepID=G7J868_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MW93	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MW93_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g26520

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g26520 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g191300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g26520

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g26520

Limit To All Plant Sequences

>Glyma17g26520.2   sequence type=transcript   gene model=Glyma17g26520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCCAAACAAACGTGTGTTCAAATCACGGAGTGTTTGTTAGGACCAAAGGGAAGAAAAAAAACGGTTTCGAAGTGTAGTACAGCAATTAAAGCTTATTCTTTTTCCTTCTGTTTTTTTTTTCTTTTTCTTTTTTACACTTTGTACTTTGTAGTACCGCATACTTTAACTCTGTGTTGTACTACAATTCAAGTTCATGAAGTGTTGAATGATTTGGCATGTACTTTTTTTTCCTTTTTTAGCAAAGGCATAAATATCGGACTGTGTTGCAAATCTTTGCTCGAGATGTCTCCTTTGTGAGATTGATTCTTACAAGAATTTCAAAGCCTTTTGTGGGTTTGTGAGATTATTTTAATCTCACTTTATTGGCTCATTTTTTTAGTTTGCTCATCACTAGGTTGTCACTCAAACCTGCATGCACGCCAAAATCATTTTTTGTAATTGTAGGTCTATAACGACATTTGCAGGTTTTGGATTCTTCATTTGGGGAAGGTTATGCATGTCTCACTTTTGTCTTCTCTGAAACATTTGAGGATTAAAGTTTTGCTGCGACATAGTTTTCCATTTGTATCACCCTGTTAGTGAGCTCCATTCTTCTATAATCCGAAAGGAAAATTTGAGAGATTAATTTGATGGGCACTATGAACAATAATGAAGAACTCGATGGCATTCAGAATTGTGACAATGATGACATTGAAAAAGCTGGACTTGAGGAGCTAGAGGAGCAAAGTGGAGTAGCATCATGGACAAGGCAAATCACAATTCGAGGACTAATAACTAGCTTCATCATTGGTATCGTCTATAGTGTGATTGTGATGAAGCTGAACCTCTCAACAGGGCTTGTTCCGAATCTTAATGTTTCAGCAGCTCTCCTTGGCTTTGTGCTAGTTCGAGCTTGGATCATGCTTCTTGAGAAAGCTAATGTTGTGTCAAAACCTTTCACTAGACAGGAGAATACCATAATTCAGACTTGTGCCGTTGCATGCTATAGCACTGCTTTTGGAGGTGGTTTTGGGTCACACCTCTTGGGTTTGAATAGGAAGACATATGAGCAAGCAGGGGTTGATACAAAGGGGAATACTCCTATCACCAAGGAGCCCGGCATTGGCTGGATGACAGCCTTTCTCTTTGTGACATACTTTGTCGGGTTATCAGCATTGATTCCCCTTAGGAAGATGATGATCATAGACTACAAATTGACTTATCCAACTGGAACTGCTACAGCTGTTCTTATTAATGGGTTCCATACTCCTAAAGGAGATGAGATGGCCAAGAAGCAGGTCCATGGTTTCTTGAAATTCTTCTCATTCAGTTTCCTTTGGTCTTTCTTCCAATGGTTCTATGCTGGTGATGGAGATCAATGTGGATTCTCTCAGTTTCCTACTTTTGGATTGAAAGCGTGGAAAAACTCATTTTACTTTGACTTCAGCATGAATTATGTTGGAGCAGGAATGATTTGTTCCCATCTTGTCAACTTATCCTTGCTTCTTGGTGCCGTGCTCTCTTGGGGTGTTATGTGGCCATTGATCAGAGGACTAAAAGGACAATGGTTCCCTGAGAGTTTATCAGAAAGTAGTATGAAGAGTCTTAATGGTTATAAGGTTTTTATTTCCATTGCCTTAATCCTTGGAGATGGGCTCTACAATTTTGCCAAAATTTTGCTTTTTACTGCTACAAATATCCATGCCAGCATGGAAAGGAGGAATCATAAATCACTTTCAATTTCAGATATCCAGAAGCAGCAGCAGCCTCTTGATCTTAAACGCAATGAAGTGTTTGTAAGAGAAAGAATTCCTATATGGTTAGCATTTACAGGATACATACTGTTCTCTGCCATTTCTATCATAATTATCCCTTTGATTTTCCCTGAAGTGAAGTGGTATTATGTGGTGGTTGCTTATCTGCTTGCACCAACTCTTAGCTTCTGCAACGCTTACAGTGCTGGCTTGACCGACATGAACATGGCCTATAACTATGGGAAAGTGGCTCTCTTTGTGCTAGCTGCCTTAGGCGGGAAAAGCCATGGCGTGGTGGCCGGACTTGTAGGGTGTGGCGTGATCAAATCTCTTGTTTCCACCTCATCCGACTTGATGCAAGATTTCAAGACCGGCCACCTCACCTTCGCTTCCCCTCGGTCGATGCTTCTTTCGCAAGCTATCGGAACAGCAATAGGTTGTGTCCTTGCACCTCTCACATTCTTCCTTTTCTATAAGGCTTTTGATGTAGGGAATCCAGATGGTGATTACAAAGCTCCATATGCCATCATTTATAGAAACATGGCGATTCTAGGTGTGGAAGGCTTTTCTGCACTCCCTCACCATTGCTTGCAGCTCTGTTGTGGGTTCTTTGCATTTGCTGTAGCAACCAACTTGGTGAGAGATTTGAACCCTAAAAACATTGGTAGATGGATTCCACTTCCAATGGCAATGGCTGTACCCTTTGTAGTTGGTGGATACTTTGCAATTGACATGTGTATGGGTAGTTTAGTTGTGTATGCATGGCAAACACTTAAAAGCAAGGAGGCAAGTTTGATGGTACCAGCAGCGGCTTCTGGTTTGATTTGTGGAGATGGATTTTGGATTCTCCCTTCATCTATTCTTGCTTTGTTTAAGGTTCATCCCCCAATCTGTATGAGATTCTTGCCAACCAAGTAGAACTTCACTTGCAAGAGATGTAGTCAAATTATGTGTATCACACATAATTTAGTTTAGGTGACAAAGGGAAAATTAAGTATGAAAATGTTACAAAAGTGTTTGAACAGATTATTACCAACACACCTTGTGATTGATCTAAATAAAATAGCTTTGTTAGCCTTCTCATAAATTTATGGATCTTAGT

Coding sequences of Glyma17g26520

Limit To All Plant Sequences

>Glyma17g26520.1   sequence type=CDS   gene model=Glyma17g26520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCACTATGAACAATAATGAAGAACTCGATGGCATTCAGAATTGTGACAATGATGACATTGAAAAAGCTGGACTTGAGGAGCTAGAGGAGCAAAGTGGAGTAGCATCATGGACAAGGCAAATCACAATTCGAGGACTAATAACTAGCTTCATCATTGGTATCGTCTATAGTGTGATTGTGATGAAGCTGAACCTCTCAACAGGGCTTGTTCCGAATCTTAATGTTTCAGCAGCTCTCCTTGGCTTTGTGCTAGTTCGAGCTTGGATCATGCTTCTTGAGAAAGCTAATGTTGTGTCAAAACCTTTCACTAGACAGGAGAATACCATAATTCAGACTTGTGCCGTTGCATGCTATAGCACTGCTTTTGGAGGTGGTTTTGGGTCACACCTCTTGGGTTTGAATAGGAAGACATATGAGCAAGCAGGGGTTGATACAAAGGGGAATACTCCTATCACCAAGGAGCCCGGCATTGGCTGGATGACAGCCTTTCTCTTTGTGACATACTTTGTCGGGTTATCAGCATTGATTCCCCTTAGGAAGATGATGATCATAGACTACAAATTGACTTATCCAACTGGAACTGCTACAGCTGTTCTTATTAATGGGTTCCATACTCCTAAAGGAGATGAGATGGCCAAGAAGCAGGTCCATGGTTTCTTGAAATTCTTCTCATTCAGTTTCCTTTGGTCTTTCTTCCAATGGTTCTATGCTGGTGATGGAGATCAATGTGGATTCTCTCAGTTTCCTACTTTTGGATTGAAAGCGTGGAAAAACTCATTTTACTTTGACTTCAGCATGAATTATGTTGGAGCAGGAATGATTTGTTCCCATCTTGTCAACTTATCCTTGCTTCTTGGTGCCGTGCTCTCTTGGGGTGTTATGTGGCCATTGATCAGAGGACTAAAAGGACAATGGTTCCCTGAGAGTTTATCAGAAAGTAGTATGAAGAGTCTTAATGGTTATAAGGTTTTTATTTCCATTGCCTTAATCCTTGGAGATGGGCTCTACAATTTTGCCAAAATTTTGCTTTTTACTGCTACAAATATCCATGCCAGCATGGAAAGGAGGAATCATAAATCACATATCCAGAAGCAGCAGCAGCCTCTTGATCTTAAACGCAATGAAGTGTTTGTAAGAGAAAGAATTCCTATATGGTTAGCATTTACAGGATACATACTGTTCTCTGCCATTTCTATCATAATTATCCCTTTGATTTTCCCTGAAGTGAAGTGGTATTATGTGGTGGTTGCTTATCTGCTTGCACCAACTCTTAGCTTCTGCAACGCTTACAGTGCTGGCTTGACCGACATGAACATGGCCTATAACTATGGGAAAGTGGCTCTCTTTGTGCTAGCTGCCTTAGGCGGGAAAAGCCATGGCGTGGTGGCCGGACTTGTAGGGTGTGGCGTGATCAAATCTCTTGTTTCCACCTCATCCGACTTGATGCAAGATTTCAAGACCGGCCACCTCACCTTCGCTTCCCCTCGGTCGATGCTTCTTTCGCAAGCTATCGGAACAGCAATAGGTTGTGTCCTTGCACCTCTCACATTCTTCCTTTTCTATAAGGCTTTTGATGTAGGGAATCCAGATGGTGATTACAAAGCTCCATATGCCATCATTTATAGAAACATGGCGATTCTAGGTGTGGAAGGCTTTTCTGCACTCCCTCACCATTGCTTGCAGCTCTGTTGTGGGTTCTTTGCATTTGCTGTAGCAACCAACTTGGTGAGAGATTTGAACCCTAAAAACATTGGTAGATGGATTCCACTTCCAATGGCAATGGCTGTACCCTTTGTAGTTGGTGGATACTTTGCAATTGACATGTGTATGGGTAGTTTAGTTGTGTATGCATGGCAAACACTTAAAAGCAAGGAGGCAAGTTTGATGGTACCAGCAGCGGCTTCTGGTTTGATTTGTGGAGATGGATTTTGGATTCTCCCTTCATCTATTCTTGCTTTGTTTAAGGTTCATCCCCCAATCTGTATGAGATTCTTGCCAACCAAGTAG

>Glyma17g26520.2   sequence type=CDS   gene model=Glyma17g26520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCACTATGAACAATAATGAAGAACTCGATGGCATTCAGAATTGTGACAATGATGACATTGAAAAAGCTGGACTTGAGGAGCTAGAGGAGCAAAGTGGAGTAGCATCATGGACAAGGCAAATCACAATTCGAGGACTAATAACTAGCTTCATCATTGGTATCGTCTATAGTGTGATTGTGATGAAGCTGAACCTCTCAACAGGGCTTGTTCCGAATCTTAATGTTTCAGCAGCTCTCCTTGGCTTTGTGCTAGTTCGAGCTTGGATCATGCTTCTTGAGAAAGCTAATGTTGTGTCAAAACCTTTCACTAGACAGGAGAATACCATAATTCAGACTTGTGCCGTTGCATGCTATAGCACTGCTTTTGGAGGTGGTTTTGGGTCACACCTCTTGGGTTTGAATAGGAAGACATATGAGCAAGCAGGGGTTGATACAAAGGGGAATACTCCTATCACCAAGGAGCCCGGCATTGGCTGGATGACAGCCTTTCTCTTTGTGACATACTTTGTCGGGTTATCAGCATTGATTCCCCTTAGGAAGATGATGATCATAGACTACAAATTGACTTATCCAACTGGAACTGCTACAGCTGTTCTTATTAATGGGTTCCATACTCCTAAAGGAGATGAGATGGCCAAGAAGCAGGTCCATGGTTTCTTGAAATTCTTCTCATTCAGTTTCCTTTGGTCTTTCTTCCAATGGTTCTATGCTGGTGATGGAGATCAATGTGGATTCTCTCAGTTTCCTACTTTTGGATTGAAAGCGTGGAAAAACTCATTTTACTTTGACTTCAGCATGAATTATGTTGGAGCAGGAATGATTTGTTCCCATCTTGTCAACTTATCCTTGCTTCTTGGTGCCGTGCTCTCTTGGGGTGTTATGTGGCCATTGATCAGAGGACTAAAAGGACAATGGTTCCCTGAGAGTTTATCAGAAAGTAGTATGAAGAGTCTTAATGGTTATAAGGTTTTTATTTCCATTGCCTTAATCCTTGGAGATGGGCTCTACAATTTTGCCAAAATTTTGCTTTTTACTGCTACAAATATCCATGCCAGCATGGAAAGGAGGAATCATAAATCACTTTCAATTTCAGATATCCAGAAGCAGCAGCAGCCTCTTGATCTTAAACGCAATGAAGTGTTTGTAAGAGAAAGAATTCCTATATGGTTAGCATTTACAGGATACATACTGTTCTCTGCCATTTCTATCATAATTATCCCTTTGATTTTCCCTGAAGTGAAGTGGTATTATGTGGTGGTTGCTTATCTGCTTGCACCAACTCTTAGCTTCTGCAACGCTTACAGTGCTGGCTTGACCGACATGAACATGGCCTATAACTATGGGAAAGTGGCTCTCTTTGTGCTAGCTGCCTTAGGCGGGAAAAGCCATGGCGTGGTGGCCGGACTTGTAGGGTGTGGCGTGATCAAATCTCTTGTTTCCACCTCATCCGACTTGATGCAAGATTTCAAGACCGGCCACCTCACCTTCGCTTCCCCTCGGTCGATGCTTCTTTCGCAAGCTATCGGAACAGCAATAGGTTGTGTCCTTGCACCTCTCACATTCTTCCTTTTCTATAAGGCTTTTGATGTAGGGAATCCAGATGGTGATTACAAAGCTCCATATGCCATCATTTATAGAAACATGGCGATTCTAGGTGTGGAAGGCTTTTCTGCACTCCCTCACCATTGCTTGCAGCTCTGTTGTGGGTTCTTTGCATTTGCTGTAGCAACCAACTTGGTGAGAGATTTGAACCCTAAAAACATTGGTAGATGGATTCCACTTCCAATGGCAATGGCTGTACCCTTTGTAGTTGGTGGATACTTTGCAATTGACATGTGTATGGGTAGTTTAGTTGTGTATGCATGGCAAACACTTAAAAGCAAGGAGGCAAGTTTGATGGTACCAGCAGCGGCTTCTGGTTTGATTTGTGGAGATGGATTTTGGATTCTCCCTTCATCTATTCTTGCTTTGTTTAAGGTTCATCCCCCAATCTGTATGAGATTCTTGCCAACCAAGTAG

Predicted protein sequences of Glyma17g26520

Limit To All Plant Sequences

>Glyma17g26520.1   sequence type=predicted peptide   gene model=Glyma17g26520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTMNNNEELDGIQNCDNDDIEKAGLEELEEQSGVASWTRQITIRGLITSFIIGIVYSVIVMKLNLSTGLVPNLNVSAALLGFVLVRAWIMLLEKANVVSKPFTRQENTIIQTCAVACYSTAFGGGFGSHLLGLNRKTYEQAGVDTKGNTPITKEPGIGWMTAFLFVTYFVGLSALIPLRKMMIIDYKLTYPTGTATAVLINGFHTPKGDEMAKKQVHGFLKFFSFSFLWSFFQWFYAGDGDQCGFSQFPTFGLKAWKNSFYFDFSMNYVGAGMICSHLVNLSLLLGAVLSWGVMWPLIRGLKGQWFPESLSESSMKSLNGYKVFISIALILGDGLYNFAKILLFTATNIHASMERRNHKSHIQKQQQPLDLKRNEVFVRERIPIWLAFTGYILFSAISIIIIPLIFPEVKWYYVVVAYLLAPTLSFCNAYSAGLTDMNMAYNYGKVALFVLAALGGKSHGVVAGLVGCGVIKSLVSTSSDLMQDFKTGHLTFASPRSMLLSQAIGTAIGCVLAPLTFFLFYKAFDVGNPDGDYKAPYAIIYRNMAILGVEGFSALPHHCLQLCCGFFAFAVATNLVRDLNPKNIGRWIPLPMAMAVPFVVGGYFAIDMCMGSLVVYAWQTLKSKEASLMVPAAASGLICGDGFWILPSSILALFKVHPPICMRFLPTK*

>Glyma17g26520.2   sequence type=predicted peptide   gene model=Glyma17g26520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTMNNNEELDGIQNCDNDDIEKAGLEELEEQSGVASWTRQITIRGLITSFIIGIVYSVIVMKLNLSTGLVPNLNVSAALLGFVLVRAWIMLLEKANVVSKPFTRQENTIIQTCAVACYSTAFGGGFGSHLLGLNRKTYEQAGVDTKGNTPITKEPGIGWMTAFLFVTYFVGLSALIPLRKMMIIDYKLTYPTGTATAVLINGFHTPKGDEMAKKQVHGFLKFFSFSFLWSFFQWFYAGDGDQCGFSQFPTFGLKAWKNSFYFDFSMNYVGAGMICSHLVNLSLLLGAVLSWGVMWPLIRGLKGQWFPESLSESSMKSLNGYKVFISIALILGDGLYNFAKILLFTATNIHASMERRNHKSLSISDIQKQQQPLDLKRNEVFVRERIPIWLAFTGYILFSAISIIIIPLIFPEVKWYYVVVAYLLAPTLSFCNAYSAGLTDMNMAYNYGKVALFVLAALGGKSHGVVAGLVGCGVIKSLVSTSSDLMQDFKTGHLTFASPRSMLLSQAIGTAIGCVLAPLTFFLFYKAFDVGNPDGDYKAPYAIIYRNMAILGVEGFSALPHHCLQLCCGFFAFAVATNLVRDLNPKNIGRWIPLPMAMAVPFVVGGYFAIDMCMGSLVVYAWQTLKSKEASLMVPAAASGLICGDGFWILPSSILALFKVHPPICMRFLPTK*

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