SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research



Report for Sequence Feature Glyma17g26520

Feature Type:gene_model
Chromosome:Gm17
Start:27576328
stop:27582133
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G53550AT Annotation by Michelle Graham. TAIR10: YELLOW STRIPE like 3 | chr5:21756081-21758776 FORWARD LENGTH=675 SoyBaseE_val: 0ISS
GO:0003006GO-bp Annotation by Michelle Graham. GO Biological Process: developmental process involved in reproduction SoyBaseN/AISS
GO:0006857GO-bp Annotation by Michelle Graham. GO Biological Process: oligopeptide transport SoyBaseN/AISS
GO:0009624GO-bp Annotation by Michelle Graham. GO Biological Process: response to nematode SoyBaseN/AISS
GO:0048316GO-bp Annotation by Michelle Graham. GO Biological Process: seed development SoyBaseN/AISS
GO:0055085GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane transport SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0051980GO-mf Annotation by Michelle Graham. GO Molecular Function: iron-nicotianamine transmembrane transporter activity SoyBaseN/AISS
PF03169PFAM OPT oligopeptide transporter protein JGI ISS
UniRef100_G7J868UniRef Annotation by Michelle Graham. Most informative UniRef hit: YSL transporter n=2 Tax=Medicago truncatula RepID=G7J868_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1MW93UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MW93_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g191300 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma17g26520.2   sequence type=transcript   gene model=Glyma17g26520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCCAAACAAACGTGTGTTCAAATCACGGAGTGTTTGTTAGGACCAAAGGGAAGAAAAAAAACGGTTTCGAAGTGTAGTACAGCAATTAAAGCTTATTCTTTTTCCTTCTGTTTTTTTTTTCTTTTTCTTTTTTACACTTTGTACTTTGTAGTACCGCATACTTTAACTCTGTGTTGTACTACAATTCAAGTTCATGAAGTGTTGAATGATTTGGCATGTACTTTTTTTTCCTTTTTTAGCAAAGGCATAAATATCGGACTGTGTTGCAAATCTTTGCTCGAGATGTCTCCTTTGTGAGATTGATTCTTACAAGAATTTCAAAGCCTTTTGTGGGTTTGTGAGATTATTTTAATCTCACTTTATTGGCTCATTTTTTTAGTTTGCTCATCACTAGGTTGTCACTCAAACCTGCATGCACGCCAAAATCATTTTTTGTAATTGTAGGTCTATAACGACATTTGCAGGTTTTGGATTCTTCATTTGGGGAAGGTTATGCATGTCTCACTTTTGTCTTCTCTGAAACATTTGAGGATTAAAGTTTTGCTGCGACATAGTTTTCCATTTGTATCACCCTGTTAGTGAGCTCCATTCTTCTATAATCCGAAAGGAAAATTTGAGAGATTAATTTGATGGGCACTATGAACAATAATGAAGAACTCGATGGCATTCAGAATTGTGACAATGATGACATTGAAAAAGCTGGACTTGAGGAGCTAGAGGAGCAAAGTGGAGTAGCATCATGGACAAGGCAAATCACAATTCGAGGACTAATAACTAGCTTCATCATTGGTATCGTCTATAGTGTGATTGTGATGAAGCTGAACCTCTCAACAGGGCTTGTTCCGAATCTTAATGTTTCAGCAGCTCTCCTTGGCTTTGTGCTAGTTCGAGCTTGGATCATGCTTCTTGAGAAAGCTAATGTTGTGTCAAAACCTTTCACTAGACAGGAGAATACCATAATTCAGACTTGTGCCGTTGCATGCTATAGCACTGCTTTTGGAGGTGGTTTTGGGTCACACCTCTTGGGTTTGAATAGGAAGACATATGAGCAAGCAGGGGTTGATACAAAGGGGAATACTCCTATCACCAAGGAGCCCGGCATTGGCTGGATGACAGCCTTTCTCTTTGTGACATACTTTGTCGGGTTATCAGCATTGATTCCCCTTAGGAAGATGATGATCATAGACTACAAATTGACTTATCCAACTGGAACTGCTACAGCTGTTCTTATTAATGGGTTCCATACTCCTAAAGGAGATGAGATGGCCAAGAAGCAGGTCCATGGTTTCTTGAAATTCTTCTCATTCAGTTTCCTTTGGTCTTTCTTCCAATGGTTCTATGCTGGTGATGGAGATCAATGTGGATTCTCTCAGTTTCCTACTTTTGGATTGAAAGCGTGGAAAAACTCATTTTACTTTGACTTCAGCATGAATTATGTTGGAGCAGGAATGATTTGTTCCCATCTTGTCAACTTATCCTTGCTTCTTGGTGCCGTGCTCTCTTGGGGTGTTATGTGGCCATTGATCAGAGGACTAAAAGGACAATGGTTCCCTGAGAGTTTATCAGAAAGTAGTATGAAGAGTCTTAATGGTTATAAGGTTTTTATTTCCATTGCCTTAATCCTTGGAGATGGGCTCTACAATTTTGCCAAAATTTTGCTTTTTACTGCTACAAATATCCATGCCAGCATGGAAAGGAGGAATCATAAATCACTTTCAATTTCAGATATCCAGAAGCAGCAGCAGCCTCTTGATCTTAAACGCAATGAAGTGTTTGTAAGAGAAAGAATTCCTATATGGTTAGCATTTACAGGATACATACTGTTCTCTGCCATTTCTATCATAATTATCCCTTTGATTTTCCCTGAAGTGAAGTGGTATTATGTGGTGGTTGCTTATCTGCTTGCACCAACTCTTAGCTTCTGCAACGCTTACAGTGCTGGCTTGACCGACATGAACATGGCCTATAACTATGGGAAAGTGGCTCTCTTTGTGCTAGCTGCCTTAGGCGGGAAAAGCCATGGCGTGGTGGCCGGACTTGTAGGGTGTGGCGTGATCAAATCTCTTGTTTCCACCTCATCCGACTTGATGCAAGATTTCAAGACCGGCCACCTCACCTTCGCTTCCCCTCGGTCGATGCTTCTTTCGCAAGCTATCGGAACAGCAATAGGTTGTGTCCTTGCACCTCTCACATTCTTCCTTTTCTATAAGGCTTTTGATGTAGGGAATCCAGATGGTGATTACAAAGCTCCATATGCCATCATTTATAGAAACATGGCGATTCTAGGTGTGGAAGGCTTTTCTGCACTCCCTCACCATTGCTTGCAGCTCTGTTGTGGGTTCTTTGCATTTGCTGTAGCAACCAACTTGGTGAGAGATTTGAACCCTAAAAACATTGGTAGATGGATTCCACTTCCAATGGCAATGGCTGTACCCTTTGTAGTTGGTGGATACTTTGCAATTGACATGTGTATGGGTAGTTTAGTTGTGTATGCATGGCAAACACTTAAAAGCAAGGAGGCAAGTTTGATGGTACCAGCAGCGGCTTCTGGTTTGATTTGTGGAGATGGATTTTGGATTCTCCCTTCATCTATTCTTGCTTTGTTTAAGGTTCATCCCCCAATCTGTATGAGATTCTTGCCAACCAAGTAGAACTTCACTTGCAAGAGATGTAGTCAAATTATGTGTATCACACATAATTTAGTTTAGGTGACAAAGGGAAAATTAAGTATGAAAATGTTACAAAAGTGTTTGAACAGATTATTACCAACACACCTTGTGATTGATCTAAATAAAATAGCTTTGTTAGCCTTCTCATAAATTTATGGATCTTAGT

>Glyma17g26520.1   sequence type=CDS   gene model=Glyma17g26520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCACTATGAACAATAATGAAGAACTCGATGGCATTCAGAATTGTGACAATGATGACATTGAAAAAGCTGGACTTGAGGAGCTAGAGGAGCAAAGTGGAGTAGCATCATGGACAAGGCAAATCACAATTCGAGGACTAATAACTAGCTTCATCATTGGTATCGTCTATAGTGTGATTGTGATGAAGCTGAACCTCTCAACAGGGCTTGTTCCGAATCTTAATGTTTCAGCAGCTCTCCTTGGCTTTGTGCTAGTTCGAGCTTGGATCATGCTTCTTGAGAAAGCTAATGTTGTGTCAAAACCTTTCACTAGACAGGAGAATACCATAATTCAGACTTGTGCCGTTGCATGCTATAGCACTGCTTTTGGAGGTGGTTTTGGGTCACACCTCTTGGGTTTGAATAGGAAGACATATGAGCAAGCAGGGGTTGATACAAAGGGGAATACTCCTATCACCAAGGAGCCCGGCATTGGCTGGATGACAGCCTTTCTCTTTGTGACATACTTTGTCGGGTTATCAGCATTGATTCCCCTTAGGAAGATGATGATCATAGACTACAAATTGACTTATCCAACTGGAACTGCTACAGCTGTTCTTATTAATGGGTTCCATACTCCTAAAGGAGATGAGATGGCCAAGAAGCAGGTCCATGGTTTCTTGAAATTCTTCTCATTCAGTTTCCTTTGGTCTTTCTTCCAATGGTTCTATGCTGGTGATGGAGATCAATGTGGATTCTCTCAGTTTCCTACTTTTGGATTGAAAGCGTGGAAAAACTCATTTTACTTTGACTTCAGCATGAATTATGTTGGAGCAGGAATGATTTGTTCCCATCTTGTCAACTTATCCTTGCTTCTTGGTGCCGTGCTCTCTTGGGGTGTTATGTGGCCATTGATCAGAGGACTAAAAGGACAATGGTTCCCTGAGAGTTTATCAGAAAGTAGTATGAAGAGTCTTAATGGTTATAAGGTTTTTATTTCCATTGCCTTAATCCTTGGAGATGGGCTCTACAATTTTGCCAAAATTTTGCTTTTTACTGCTACAAATATCCATGCCAGCATGGAAAGGAGGAATCATAAATCACATATCCAGAAGCAGCAGCAGCCTCTTGATCTTAAACGCAATGAAGTGTTTGTAAGAGAAAGAATTCCTATATGGTTAGCATTTACAGGATACATACTGTTCTCTGCCATTTCTATCATAATTATCCCTTTGATTTTCCCTGAAGTGAAGTGGTATTATGTGGTGGTTGCTTATCTGCTTGCACCAACTCTTAGCTTCTGCAACGCTTACAGTGCTGGCTTGACCGACATGAACATGGCCTATAACTATGGGAAAGTGGCTCTCTTTGTGCTAGCTGCCTTAGGCGGGAAAAGCCATGGCGTGGTGGCCGGACTTGTAGGGTGTGGCGTGATCAAATCTCTTGTTTCCACCTCATCCGACTTGATGCAAGATTTCAAGACCGGCCACCTCACCTTCGCTTCCCCTCGGTCGATGCTTCTTTCGCAAGCTATCGGAACAGCAATAGGTTGTGTCCTTGCACCTCTCACATTCTTCCTTTTCTATAAGGCTTTTGATGTAGGGAATCCAGATGGTGATTACAAAGCTCCATATGCCATCATTTATAGAAACATGGCGATTCTAGGTGTGGAAGGCTTTTCTGCACTCCCTCACCATTGCTTGCAGCTCTGTTGTGGGTTCTTTGCATTTGCTGTAGCAACCAACTTGGTGAGAGATTTGAACCCTAAAAACATTGGTAGATGGATTCCACTTCCAATGGCAATGGCTGTACCCTTTGTAGTTGGTGGATACTTTGCAATTGACATGTGTATGGGTAGTTTAGTTGTGTATGCATGGCAAACACTTAAAAGCAAGGAGGCAAGTTTGATGGTACCAGCAGCGGCTTCTGGTTTGATTTGTGGAGATGGATTTTGGATTCTCCCTTCATCTATTCTTGCTTTGTTTAAGGTTCATCCCCCAATCTGTATGAGATTCTTGCCAACCAAGTAG

>Glyma17g26520.2   sequence type=CDS   gene model=Glyma17g26520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCACTATGAACAATAATGAAGAACTCGATGGCATTCAGAATTGTGACAATGATGACATTGAAAAAGCTGGACTTGAGGAGCTAGAGGAGCAAAGTGGAGTAGCATCATGGACAAGGCAAATCACAATTCGAGGACTAATAACTAGCTTCATCATTGGTATCGTCTATAGTGTGATTGTGATGAAGCTGAACCTCTCAACAGGGCTTGTTCCGAATCTTAATGTTTCAGCAGCTCTCCTTGGCTTTGTGCTAGTTCGAGCTTGGATCATGCTTCTTGAGAAAGCTAATGTTGTGTCAAAACCTTTCACTAGACAGGAGAATACCATAATTCAGACTTGTGCCGTTGCATGCTATAGCACTGCTTTTGGAGGTGGTTTTGGGTCACACCTCTTGGGTTTGAATAGGAAGACATATGAGCAAGCAGGGGTTGATACAAAGGGGAATACTCCTATCACCAAGGAGCCCGGCATTGGCTGGATGACAGCCTTTCTCTTTGTGACATACTTTGTCGGGTTATCAGCATTGATTCCCCTTAGGAAGATGATGATCATAGACTACAAATTGACTTATCCAACTGGAACTGCTACAGCTGTTCTTATTAATGGGTTCCATACTCCTAAAGGAGATGAGATGGCCAAGAAGCAGGTCCATGGTTTCTTGAAATTCTTCTCATTCAGTTTCCTTTGGTCTTTCTTCCAATGGTTCTATGCTGGTGATGGAGATCAATGTGGATTCTCTCAGTTTCCTACTTTTGGATTGAAAGCGTGGAAAAACTCATTTTACTTTGACTTCAGCATGAATTATGTTGGAGCAGGAATGATTTGTTCCCATCTTGTCAACTTATCCTTGCTTCTTGGTGCCGTGCTCTCTTGGGGTGTTATGTGGCCATTGATCAGAGGACTAAAAGGACAATGGTTCCCTGAGAGTTTATCAGAAAGTAGTATGAAGAGTCTTAATGGTTATAAGGTTTTTATTTCCATTGCCTTAATCCTTGGAGATGGGCTCTACAATTTTGCCAAAATTTTGCTTTTTACTGCTACAAATATCCATGCCAGCATGGAAAGGAGGAATCATAAATCACTTTCAATTTCAGATATCCAGAAGCAGCAGCAGCCTCTTGATCTTAAACGCAATGAAGTGTTTGTAAGAGAAAGAATTCCTATATGGTTAGCATTTACAGGATACATACTGTTCTCTGCCATTTCTATCATAATTATCCCTTTGATTTTCCCTGAAGTGAAGTGGTATTATGTGGTGGTTGCTTATCTGCTTGCACCAACTCTTAGCTTCTGCAACGCTTACAGTGCTGGCTTGACCGACATGAACATGGCCTATAACTATGGGAAAGTGGCTCTCTTTGTGCTAGCTGCCTTAGGCGGGAAAAGCCATGGCGTGGTGGCCGGACTTGTAGGGTGTGGCGTGATCAAATCTCTTGTTTCCACCTCATCCGACTTGATGCAAGATTTCAAGACCGGCCACCTCACCTTCGCTTCCCCTCGGTCGATGCTTCTTTCGCAAGCTATCGGAACAGCAATAGGTTGTGTCCTTGCACCTCTCACATTCTTCCTTTTCTATAAGGCTTTTGATGTAGGGAATCCAGATGGTGATTACAAAGCTCCATATGCCATCATTTATAGAAACATGGCGATTCTAGGTGTGGAAGGCTTTTCTGCACTCCCTCACCATTGCTTGCAGCTCTGTTGTGGGTTCTTTGCATTTGCTGTAGCAACCAACTTGGTGAGAGATTTGAACCCTAAAAACATTGGTAGATGGATTCCACTTCCAATGGCAATGGCTGTACCCTTTGTAGTTGGTGGATACTTTGCAATTGACATGTGTATGGGTAGTTTAGTTGTGTATGCATGGCAAACACTTAAAAGCAAGGAGGCAAGTTTGATGGTACCAGCAGCGGCTTCTGGTTTGATTTGTGGAGATGGATTTTGGATTCTCCCTTCATCTATTCTTGCTTTGTTTAAGGTTCATCCCCCAATCTGTATGAGATTCTTGCCAACCAAGTAG

>Glyma17g26520.1   sequence type=predicted peptide   gene model=Glyma17g26520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTMNNNEELDGIQNCDNDDIEKAGLEELEEQSGVASWTRQITIRGLITSFIIGIVYSVIVMKLNLSTGLVPNLNVSAALLGFVLVRAWIMLLEKANVVSKPFTRQENTIIQTCAVACYSTAFGGGFGSHLLGLNRKTYEQAGVDTKGNTPITKEPGIGWMTAFLFVTYFVGLSALIPLRKMMIIDYKLTYPTGTATAVLINGFHTPKGDEMAKKQVHGFLKFFSFSFLWSFFQWFYAGDGDQCGFSQFPTFGLKAWKNSFYFDFSMNYVGAGMICSHLVNLSLLLGAVLSWGVMWPLIRGLKGQWFPESLSESSMKSLNGYKVFISIALILGDGLYNFAKILLFTATNIHASMERRNHKSHIQKQQQPLDLKRNEVFVRERIPIWLAFTGYILFSAISIIIIPLIFPEVKWYYVVVAYLLAPTLSFCNAYSAGLTDMNMAYNYGKVALFVLAALGGKSHGVVAGLVGCGVIKSLVSTSSDLMQDFKTGHLTFASPRSMLLSQAIGTAIGCVLAPLTFFLFYKAFDVGNPDGDYKAPYAIIYRNMAILGVEGFSALPHHCLQLCCGFFAFAVATNLVRDLNPKNIGRWIPLPMAMAVPFVVGGYFAIDMCMGSLVVYAWQTLKSKEASLMVPAAASGLICGDGFWILPSSILALFKVHPPICMRFLPTK*

>Glyma17g26520.2   sequence type=predicted peptide   gene model=Glyma17g26520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTMNNNEELDGIQNCDNDDIEKAGLEELEEQSGVASWTRQITIRGLITSFIIGIVYSVIVMKLNLSTGLVPNLNVSAALLGFVLVRAWIMLLEKANVVSKPFTRQENTIIQTCAVACYSTAFGGGFGSHLLGLNRKTYEQAGVDTKGNTPITKEPGIGWMTAFLFVTYFVGLSALIPLRKMMIIDYKLTYPTGTATAVLINGFHTPKGDEMAKKQVHGFLKFFSFSFLWSFFQWFYAGDGDQCGFSQFPTFGLKAWKNSFYFDFSMNYVGAGMICSHLVNLSLLLGAVLSWGVMWPLIRGLKGQWFPESLSESSMKSLNGYKVFISIALILGDGLYNFAKILLFTATNIHASMERRNHKSLSISDIQKQQQPLDLKRNEVFVRERIPIWLAFTGYILFSAISIIIIPLIFPEVKWYYVVVAYLLAPTLSFCNAYSAGLTDMNMAYNYGKVALFVLAALGGKSHGVVAGLVGCGVIKSLVSTSSDLMQDFKTGHLTFASPRSMLLSQAIGTAIGCVLAPLTFFLFYKAFDVGNPDGDYKAPYAIIYRNMAILGVEGFSALPHHCLQLCCGFFAFAVATNLVRDLNPKNIGRWIPLPMAMAVPFVVGGYFAIDMCMGSLVVYAWQTLKSKEASLMVPAAASGLICGDGFWILPSSILALFKVHPPICMRFLPTK*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo