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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G57850 | AT | Annotation by Michelle Graham. TAIR10: D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein | chr5:23435548-23437287 REVERSE LENGTH=373 | SoyBase | E_val: 9.00E-160 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0008153 | GO-bp | Annotation by Michelle Graham. GO Biological Process: para-aminobenzoic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0046654 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tetrahydrofolate biosynthetic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0008696 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 4-amino-4-deoxychorismate lyase activity | SoyBase | N/A | ISS |
| KOG0975 | KOG | Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily | JGI | ISS | |
| PTHR11825 | Panther | SUBGROUP IIII AMINOTRANSFERASE | JGI | ISS | |
| PTHR11825:SF6 | Panther | BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE RELATED | JGI | ISS | |
| PF01063 | PFAM | Aminotransferase class IV | JGI | ISS | |
| UniRef100_B9RS41 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: D-alanine aminotransferase, putative n=1 Tax=Ricinus communis RepID=B9RS41_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1K9A2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K9A2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g26230 not represented in the dataset |
Glyma17g26230 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g190800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g26230.3 sequence type=CDS gene model=Glyma17g26230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTCTCTCTCCAACAATTCCTTCCACACACTTCCTCTAAACTGCTTGACCATTCTCTTTCCTTAAAGCGCCACGGCCACCGCCGCTTCCACCGCCACTGCCCCACCACTCTCAGCAGTTCCCACCAATCCGGACCCTCGCTTTGTGATTCCAAAACTCAAGTGTCTCGTGTTCCGCTTTTGACTTCCACTCAGGCCTATGAAAAGCTAAAAACATTTAGAGAAAATATAAAGGGCAAGCAACAATTCCTTGCCATGTATTCTAGTATTTTTGGTGGGATAACAACAGACCCAGCTGCTATGGTTATTCCTATGGATGACCACATGGTCCACAGAGGCCACGGTGTCTTTGATACTGCAGCAATAATGGATGGATACCTATATGAGCTAGATCAACACCTTGATCGCTTTTTAAGGTCAGCATCCATGTCTAAAATAGATCCCCCATTTGATCGAGGAAGCATAAGAAGAATACTCATACAAACTGTAAGTGCTTCCAAGTGTAGAAAAGGATCACTAAGATATTGGCTCTCGGCAGGACCTGGCGACTTTCAGTTATCTCCCTCTTGTTGCCACCGATCAAGTCTGTATGCGATAGTAATACAGGATCTGTCACCATCCTCACCTAATTTCAGGGGCGTTAAAGTTGTCACTTCATCTATTCCCATTAAACACCCCAAGTTTGCTATCACTAAGAGTGTGAACTATCTTCCAAATGTGCTCTCAAAGGTGGAAGCTGAAGAAGCTGGTGCTTTTGTAGGCATTTGGCTTGATGGTGAAGGTTTTGTTGCTGAAGGGCCTAATATGAATGTGGCCTTTGTCACTAAAGATAAGGAACTTATAATGCCACACTTTGACAAAATTCTAAGTGGCTGCACAGCTAAGAGAGTTTTAACCCTTGCTGAGAGCTTGTTAAGGGAGGGTAAGCTTAAAGGGATAAGGGTGAAAACTGTGACTGTCGAGGAAGGTAAGCAAGCAGATGAAATGATGCTTCTTGGCAGCGGAGTTCTTGTTTGCCCTGTAGTGCAATGGGATGAGCAGGTTATTGGTGATGGCAAAGAAGGCCCTATAACGCAGGCTCTCTTAAATCTAATTGTTGAGGACATGAAATCAGGTCCCTCCACTGTTCGTATACCTGTTCCTTATTGA
>Glyma17g26230.3 sequence type=predicted peptide gene model=Glyma17g26230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFSLQQFLPHTSSKLLDHSLSLKRHGHRRFHRHCPTTLSSSHQSGPSLCDSKTQVSRVPLLTSTQAYEKLKTFRENIKGKQQFLAMYSSIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAIMDGYLYELDQHLDRFLRSASMSKIDPPFDRGSIRRILIQTVSASKCRKGSLRYWLSAGPGDFQLSPSCCHRSSLYAIVIQDLSPSSPNFRGVKVVTSSIPIKHPKFAITKSVNYLPNVLSKVEAEEAGAFVGIWLDGEGFVAEGPNMNVAFVTKDKELIMPHFDKILSGCTAKRVLTLAESLLREGKLKGIRVKTVTVEEGKQADEMMLLGSGVLVCPVVQWDEQVIGDGKEGPITQALLNLIVEDMKSGPSTVRIPVPY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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