Glyma17g25950 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma17g25950

Feature Type:	gene_model
Chromosome:	Gm17
Start:	26982525
stop:	26986035
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g25950

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G25752	AT	Annotation by Michelle Graham. TAIR10: rhomboid-like protein 11 \| chr5:8951503-8953323 REVERSE LENGTH=280	SoyBase	E_val: 5.00E-119	ISS
GO:0080140	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of jasmonic acid metabolic process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009706	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast inner membrane	SoyBase	N/A	ISS
GO:0004252	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity	SoyBase	N/A	ISS
PTHR22936	Panther	RHOMBOID-RELATED	JGI		ISS
PF01694	PFAM	Rhomboid family	JGI		ISS
UniRef100_C6T841	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T841_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_G7I4B9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Rhomboid family protein (ISS) n=1 Tax=Medicago truncatula RepID=G7I4B9_MEDTR	SoyBase	E_val: 5.00E-120	ISS

Expression Patterns of Glyma17g25950

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g25950 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g190400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g25950

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g25950

Limit To All Plant Sequences

>Glyma17g25950.1   sequence type=CDS   gene model=Glyma17g25950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCAGCAACTTGGAGTTCCATTTAAGTTATCATGCAAACCCTCTCACATTCACGCTCTTAAACCCTTTCACTCTCTCCCTCCCCTTCGCACCTTCACCCCCAAACCTTCTCTTAATGCCAAATCCCATCATCATCATCATCCTTTATTAACGCTTCTTCGTTCCCACCGCACTCTCGCACCCTGCTGCAACTCCAACAAATCAGATATAATGTCACAATTGGAGCTTGGGAAACCGGAGCAAAAGGGGAAACCGGAGAAGCGAGTAAATGGTATATTCTGGATCATTCTCCTCAACATTGCCATATTCGTCGCTGACCACTTTTTTCGGGTTAATGGGATCAAGGCTTTATACTTGTACCACAATTGGCCTTCTTGGTACCAGTTTGTCACAGCTACATTTTGTCATGCTAATTGGAAGCATCTTTCTAGCAACCTTTTCTTCTTGTACATTTTTGGAAAGCTTGTTGAAGAAGAGGAAGGGAACTTTGCTTTGTGGCTTTCTTACATTCTTACTGGTGTAGGAGCCAACCTTGTTTCATGGTTGGTTTTACCAAGAAATACGGTTTCTGTTGGAGCTTCTGGTGCTGTTTTCGGGTTATTTTCTATCAGTGTCCTTGTAAAGATGTCCTGGGATTGGAGGAAGATCCTTGAAGTGCTTATATTGGGTCAGTTTGTTATAGAGAAGGTCATGGAAGCAGCCCAAGCTTCAACATCATTGTCAGGCCGAGGAGGCTACGCATTGCAAAGTGTAAATCACATTGCACATCTTTCTGGTGCTCTTGTTGGTGTGCTTTTGGTTTGGCTCCTTAGCAAAGTTCCTTCAGATCCTTCTGACCAATAA

Predicted protein sequences of Glyma17g25950

Limit To All Plant Sequences

>Glyma17g25950.1   sequence type=predicted peptide   gene model=Glyma17g25950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQQLGVPFKLSCKPSHIHALKPFHSLPPLRTFTPKPSLNAKSHHHHHPLLTLLRSHRTLAPCCNSNKSDIMSQLELGKPEQKGKPEKRVNGIFWIILLNIAIFVADHFFRVNGIKALYLYHNWPSWYQFVTATFCHANWKHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANLVSWLVLPRNTVSVGASGAVFGLFSISVLVKMSWDWRKILEVLILGQFVIEKVMEAAQASTSLSGRGGYALQSVNHIAHLSGALVGVLLVWLLSKVPSDPSDQ*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain