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Report for Sequence Feature Glyma17g24602

Feature Type:gene_model
Chromosome:Gm17
Start:24863144
stop:24875014
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g24602
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G24800AT Annotation by Michelle Graham. TAIR10: basic leucine zipper 9 | chr5:8515259-8516541 FORWARD LENGTH=277 SoyBaseE_val: 5.00E-58ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0071333GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to glucose stimulus SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0042803GO-mf Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
GO:0046982GO-mf Annotation by Michelle Graham. GO Molecular Function: protein heterodimerization activity SoyBaseN/AISS
GO:0046983GO-mf Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity SoyBaseN/AISS
PTHR22952Panther CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED JGI ISS
PTHR22952:SF6Panther CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED JGI ISS
PF00170PFAM bZIP transcription factor JGI ISS
PF12498PFAM Basic leucine-zipper C terminal JGI ISS
UniRef100_I1MW73UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MW73_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q0GPE8UniRef Annotation by Michelle Graham. Most informative UniRef hit: BZIP transcription factor bZIP16 n=1 Tax=Glycine max RepID=Q0GPE8_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g24602
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g24602 not represented in the dataset
Glyma17g24602 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g24602 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g188500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g24602
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma17g24602
>Glyma17g24602.2   sequence type=transcript   gene model=Glyma17g24602   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGCTTCTCTTATTCCCTTTTCTCTCTCCCTCTACTCTCCCCACCTCTTTCTCATTTTTCGGCCATGGAGTCCAAGTGGGGCGCCGCCGCCACCAGCATCATAGCGGCAAACTTCGACGACTTCAAGTGGATCGCCTCCATGTTCTATCCCGACGTTGCAAACGACAACGTCAAGCCATGCAAGCTCGATCCTTTCACCGACGAAGCTTTCCAAAACCTGGAGGCAGTAACCGCATCTTCAACATGTGGTGGAGTAACAGAAGATACCCTTGTCCACTCCCAAAACCTCACTCCCATTCAATCCACTATCTCTGCAACTATTGATTCTCTGTCTTCCATTTGTGTTGGGAGCCCATTGTCTGCTAATAAACCAAACGCGAGAGATAATCAAGTAAAAGGGGCCACCACCACTACAAGTGGTTCCTCACGTGAGCCATCTGATGAGGATGATGAAGCAGGTCCTTGTGAACAAAGCACAAACGCTATTGATGTGAAGCGCCTAAGAAGGAAGGTTTCTAATCGAGAGTCTGCAAGGAGGTCCAGGAGGAGAAAACAAGCCCATTTGGCTGACCTGGAGTGGCAAGTCGAACGGTTGAGACTTGAAAACGCAAACCTATTTAAGCAGCTTACAGATGCCAGCCAACAATTTCGTGAAGCTGATACAAATAATCGAGTCCTAAAATCAGATGTCGAAGCTTTGAGAGCTAAGGTGAAATTAGCTGAGGATATGATCACTCGTGGCACACTCACCCCTACCAACAACCAGATTCTTCAAAATCAGAGTCCACTAAACACCCCACCTCAACTCAACACGAATAATTTACGCCGCATGGGATATGTTTCGCCAACCTTCACCGTCCATGGGAATGATGCTACTGCTTCATATGGTGGTGGAATCACAGTTAGTGGACAAAATTCACCGCTTGGTGGGCTTGGAAACTTGGATAATATTCCATGCAGCGATTTCAATAGTGGAGTCAATAGCGATAATGCTGTGAGCTCTATGACTAGCATGTGGCCTTAATTAACTTGACGTAATTTTTATGGGTGATGTTAGGTGCACTCAGTATTTTTTGAAAATGTCAAAACTGCCCTCCGCTATCTTCTTCTTTTAAAAGCTGTTTTTTTTTGTGTGTGCAAAAATGTTAGCGCAGTGTTTCTTTCGTACGAATCAAGTTGATCCACAAGGTTGATACGGATCAAGTTGATCCATATCTTGATATTAAGCATACAGATTAACTTGATCCGTAAAAGCCTTACGGATCAACTTGATCCGTAAGCTTATAGAAAATTTCAACGGTGCAGCACCAACAGAAGAAGAATACGCAAAGTCGAGGTGAAGACCACCACCACCATGCTGCCAATAATGTTGAAGAAGAACGCGCAAAAGAAGACAAAGGGCAGTCGCGGATGGAAAACGAAACGAAAGAGACAAGAATGACAGCAACAGGGTGCAAGGAGTAAGATTCTGGTGAGGAGTTGCCGAGCTGACGTGATG
Coding sequences of Glyma17g24602
>Glyma17g24602.1   sequence type=CDS   gene model=Glyma17g24602   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTCCAAGTGGGGCGCCGCCGCCACCAGCATCATAGCGGCAAACTTCGACGACTTCAAGTGGATCGCCTCCATGTTCTATCCCGACGTTGCAAACGACAACGTCAAGCCATGCAAGCTCGATCCTTTCACCGACGAAGCTTTCCAAAACCTGGAGGCAGTAACCGCATCTTCAACATGTGGTGGAGTAACAGAAGATACCCTTGTCCACTCCCAAAACCTCACTCCCATTCAATCCACTATCTCTGCAACTATTGATTCTCTGTCTTCCATTTGTGTTGGGAGCCCATTGTCTGCTAATAAACCAAACGCGAGAGATAATCAAGTAAAAGGGGCCACCACCACTACAAGTGGTTCCTCACGTGAGCCATCTGATGAGGATGATGAAGCAGGTCCTTGTGAACAAAGCACAAACGCTATTGATGTGAAGCGCCTAAGAAGGAAGGTTTCTAATCGAGAGTCTGCAAGGAGGTCCAGGAGGAGAAAACAAGCCCATTTGGCTGACCTGGAGTGGCAAGTCGAACGGTTGAGACTTGAAAACGCAAACCTATTTAAGCAGCTTACAGATGCCAGCCAACAATTTCGTGAAGCTGATACAAATAATCGAGTCCTAAAATCAGATGTCGAAGCTTTGAGAGCTAAGGTGAAATTAGCTGAGGATATGATCACTCGTGGCACACTCACCCCTACCAACAACCAGATTCTTCAAAATCAGAGTCCACTAAACACCCCACCTCAACTCAACACGAATAATTTACGCCGCATGGGATATGTTTCGCCAACCTTCACCGTCCATGGGAATGATGCTACTGCTTCATATGGTGGTGGAATCACAGTTAGTGGACAAAATTCACCGCTTGGTGGGCTTGGAAACTTGGATAATATTCCATGCAGCGATTTCAATAGTGGAGTCAATAGCGATAATGCTGTGAGCTCTATGACTAGCATGTGGCCTTAA

>Glyma17g24602.2   sequence type=CDS   gene model=Glyma17g24602   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTCCAAGTGGGGCGCCGCCGCCACCAGCATCATAGCGGCAAACTTCGACGACTTCAAGTGGATCGCCTCCATGTTCTATCCCGACGTTGCAAACGACAACGTCAAGCCATGCAAGCTCGATCCTTTCACCGACGAAGCTTTCCAAAACCTGGAGGCAGTAACCGCATCTTCAACATGTGGTGGAGTAACAGAAGATACCCTTGTCCACTCCCAAAACCTCACTCCCATTCAATCCACTATCTCTGCAACTATTGATTCTCTGTCTTCCATTTGTGTTGGGAGCCCATTGTCTGCTAATAAACCAAACGCGAGAGATAATCAAGTAAAAGGGGCCACCACCACTACAAGTGGTTCCTCACGTGAGCCATCTGATGAGGATGATGAAGCAGGTCCTTGTGAACAAAGCACAAACGCTATTGATGTGAAGCGCCTAAGAAGGAAGGTTTCTAATCGAGAGTCTGCAAGGAGGTCCAGGAGGAGAAAACAAGCCCATTTGGCTGACCTGGAGTGGCAAGTCGAACGGTTGAGACTTGAAAACGCAAACCTATTTAAGCAGCTTACAGATGCCAGCCAACAATTTCGTGAAGCTGATACAAATAATCGAGTCCTAAAATCAGATGTCGAAGCTTTGAGAGCTAAGGTGAAATTAGCTGAGGATATGATCACTCGTGGCACACTCACCCCTACCAACAACCAGATTCTTCAAAATCAGAGTCCACTAAACACCCCACCTCAACTCAACACGAATAATTTACGCCGCATGGGATATGTTTCGCCAACCTTCACCGTCCATGGGAATGATGCTACTGCTTCATATGGTGGTGGAATCACAGTTAGTGGACAAAATTCACCGCTTGGTGGGCTTGGAAACTTGGATAATATTCCATGCAGCGATTTCAATAGTGGAGTCAATAGCGATAATGCTGTGAGCTCTATGACTAGCATGTGGCCTTAA
Predicted protein sequences of Glyma17g24602
>Glyma17g24602.1   sequence type=predicted peptide   gene model=Glyma17g24602   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESKWGAAATSIIAANFDDFKWIASMFYPDVANDNVKPCKLDPFTDEAFQNLEAVTASSTCGGVTEDTLVHSQNLTPIQSTISATIDSLSSICVGSPLSANKPNARDNQVKGATTTTSGSSREPSDEDDEAGPCEQSTNAIDVKRLRRKVSNRESARRSRRRKQAHLADLEWQVERLRLENANLFKQLTDASQQFREADTNNRVLKSDVEALRAKVKLAEDMITRGTLTPTNNQILQNQSPLNTPPQLNTNNLRRMGYVSPTFTVHGNDATASYGGGITVSGQNSPLGGLGNLDNIPCSDFNSGVNSDNAVSSMTSMWP*

>Glyma17g24602.2   sequence type=predicted peptide   gene model=Glyma17g24602   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESKWGAAATSIIAANFDDFKWIASMFYPDVANDNVKPCKLDPFTDEAFQNLEAVTASSTCGGVTEDTLVHSQNLTPIQSTISATIDSLSSICVGSPLSANKPNARDNQVKGATTTTSGSSREPSDEDDEAGPCEQSTNAIDVKRLRRKVSNRESARRSRRRKQAHLADLEWQVERLRLENANLFKQLTDASQQFREADTNNRVLKSDVEALRAKVKLAEDMITRGTLTPTNNQILQNQSPLNTPPQLNTNNLRRMGYVSPTFTVHGNDATASYGGGITVSGQNSPLGGLGNLDNIPCSDFNSGVNSDNAVSSMTSMWP*






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