Glyma17g23770 - SoyBase

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Report for Sequence Feature Glyma17g23770

Feature Type:	gene_model
Chromosome:	Gm17
Start:	23932487
stop:	23938307
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g23770

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G03040	AT	Annotation by Michelle Graham. TAIR10: IQ-domain 2 \| chr5:710380-712406 REVERSE LENGTH=461	SoyBase	E_val: 7.00E-128	ISS
GO:0006007	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucose catabolic process	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0048767	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair elongation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
PTHR10699	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR10699:SF9	Panther	CALMODULIN BINDING	JGI		ISS
PF00612	PFAM	IQ calmodulin-binding motif	JGI		ISS
UniRef100_G7L1R6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: IQ domain-containing protein n=1 Tax=Medicago truncatula RepID=G7L1R6_MEDTR	SoyBase	E_val: 3.00E-138	ISS
UniRef100_I1MW52	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MW52_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g23770

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g23770 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g185200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g23770

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g23770

Limit To All Plant Sequences

>Glyma17g23770.1   sequence type=CDS   gene model=Glyma17g23770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAAAAAAGGAAGTTGGTTTTCTGCAGTGAAGAAAGTTTTCAGTTCAGATTCCAAAAAAGACAAGAAAAAACAGAAAAGCGACAAGTCAAAGAAAGCAAGCAGTGACAAGGATGCAGAAGCAGCTGTTGTTCTTCCACCAATAGAAGATGCCAAATTAATTGAGGCAGAGAAGGAACAGAGCAAACATGCTGCTTCTTTGGCTTTTGCCACTGCTGTTGCTGCAGAGGCTGCTGTTGCCGCTGCTCAGGCTGCTGCCGAGGTTGTTCGTCTCACAAGTATGCCACATTACACTGGAAGGACTAAGGAAGAAATTGCAGCCATCAAGGTTCAGACTGCATTCCGTGGATATATGGCAAGAAGGGCATTGCGTGCGTTGAGAGGATTGGTGAGGTTGAAAACATTAGTACAAGGGCAATCTGTTAAACGGCAAGCTGCTAGCACCCTACGAAGCATGCAAACTCTAGCAAGATTACAGTCTCAGATTCGTGAAAGGAGAATTAGAATGTCCGAAGAGAACCAAGCTCTTCAGCGCCAACTACATCAGAAACATGAAAAAGAACTTGAGAAGTTGCGTGCTGCTGTTGGAGAAGAATGGGATGATAGCTCGCAGTCAAAGGAGCAAATTGAAGCAAAATTGTTGCACAGGCAAGAAGCTGCTTTGAGAAGAGAGAGAGCTTTGGCCTATTCATTCTCACATCAGCAAACATGGAAGGGCTCTTCAAAGTCATTAAATCCAACATTTATGGATCCAAACAATCCCCAATGGGGGTGGAGTTGGCTAGAGAGATGGATGGCTACTAGGCCATGGGATGGCCATAGCACTGTGGTGGATCACAATGACCATGCATCTGTGAAGAGTGCAGCGAGCCGTGCCGTGTCTGTAGGGCAAATCACCAAATTGTACTCTCTCCAAGATAAAAAACCTTCCCCTTTTGGCTCAAAAGCAAGAAGACCTGCCCCTCAAAGTTCCCATTCAAAGGCACCATCTACTAATGGAAAAGCAAGGCCATCAAGCTCAACAAAGGGTAGTAGTGTTTGGGGTGGAGATGAGGACTCAAGAAGCATGTTTAGTGTTCAGTCGGAGCGCTACCGCCGACACAGCATTGCAGGATCCTCAGTGAGAGATGATGATAGCCTTGCAAGCACACCTGCCATTCCAAGTTACATGGCAGCCACAAGCTCAGCAAAGGCCAGGTCCAAAATCATAAGGCATTCACCTGAAAAAAAAGGTGGTGGTGGTTCTGTTTCTGCAAGGAAGCGACTTTCTTTCTCACCCTCTTCTGCTGCTAATTCAAGAAGGCATTCTGATCCTCCTAAGGTGGAAATGGTTTACAATAAGGATGCTGCTGCGGCTACAGTAAGCAATGGAAGGGGAAGGTAG

Predicted protein sequences of Glyma17g23770

Limit To All Plant Sequences

>Glyma17g23770.1   sequence type=predicted peptide   gene model=Glyma17g23770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKKGSWFSAVKKVFSSDSKKDKKKQKSDKSKKASSDKDAEAAVVLPPIEDAKLIEAEKEQSKHAASLAFATAVAAEAAVAAAQAAAEVVRLTSMPHYTGRTKEEIAAIKVQTAFRGYMARRALRALRGLVRLKTLVQGQSVKRQAASTLRSMQTLARLQSQIRERRIRMSEENQALQRQLHQKHEKELEKLRAAVGEEWDDSSQSKEQIEAKLLHRQEAALRRERALAYSFSHQQTWKGSSKSLNPTFMDPNNPQWGWSWLERWMATRPWDGHSTVVDHNDHASVKSAASRAVSVGQITKLYSLQDKKPSPFGSKARRPAPQSSHSKAPSTNGKARPSSSTKGSSVWGGDEDSRSMFSVQSERYRRHSIAGSSVRDDDSLASTPAIPSYMAATSSAKARSKIIRHSPEKKGGGGSVSARKRLSFSPSSAANSRRHSDPPKVEMVYNKDAAAATVSNGRGR*

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