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Report for Sequence Feature Glyma17g22892

Feature Type:gene_model
Chromosome:Gm17
Start:22818181
stop:22820656
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g22892
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G11560AT Annotation by Michelle Graham. TAIR10: LETM1-like protein | chr3:3639553-3645506 FORWARD LENGTH=872 SoyBaseE_val: 4.00E-21ISS
GO:0010075GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
PTHR14009Panther LEUCINE ZIPPER-EF-HAND CONTAINING TRANSMEMBRANE PROTEIN JGI ISS
PTHR14009:SF4Panther SUBFAMILY NOT NAMED JGI ISS
PF07766PFAM LETM1-like protein JGI ISS
UniRef100_Q8H0W4UniRef Annotation by Michelle Graham. Most informative UniRef hit: AT3G11560 protein n=2 Tax=Arabidopsis thaliana RepID=Q8H0W4_ARATH SoyBaseE_val: 2.00E-18ISS
UniRef100_UPI0002338C99UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002338C99 related cluster n=1 Tax=unknown RepID=UPI0002338C99 SoyBaseE_val: 2.00E-96ISS

Expression Patterns of Glyma17g22892
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g22892 not represented in the dataset
Glyma17g22892 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g22892 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g182300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g22892
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma17g22892
>Glyma17g22892.2   sequence type=transcript   gene model=Glyma17g22892   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTGCACACTTCAATCGCTCAACTCAACAATCATTGGACACAGCTTCGCGCTCATACTTGCTTCGTTGTCAGGGTTTGTTAAGTATTTGTCTGCAATATCACTGGGCTGCTTATGACAATTCAGGGTAGGTTGGTTCTGGTTTGATGGATTCTTATATGCACTAAATATTGTGGATCATTAAATAGTGCCTATTTGCAGCGAATCACTAAATACTGCGGATCATGCTGCATTTGACAACCATACATCATATATGGGAAGTATAAATGGACCCAAGTTACCTCTGGTGTTTGAAGTGCAGCAGATGCCACATGATTTAACTACAGAAGGATGTCCAAAGAACAATTTTCAAAACAGTTGTATATTCAATAAGGCTCCAATTTCAGCAATCACGAATAAGAAAACATACGAGGAAGATACCTGTGTCGACAAGTCAAATCCTCAGCATGAAAGTTTTATCAAGAGATACAGCATCAAGTTGGCATCCACAAGTGCAGACCTCTGGATGGGTATTGTATTGCTCTTCATAGACATTATGATTGCTTTAGAAATACTTGTAAGGCAAGTGCACGGCTGCAAGGCTTCCGGGAGTCAAAGAAAGAGACTAAACAGAACCATGACTGACATTATTGTGCTAATTCCAGTGACAATCTTGATGCTAATTCCTGTAACAGCTGTAGGCCATGCAGCTATTCTAGCAGCTATCAAGAAGTATATGACATTAAATCTTTTGGATATATACTTTTAG
Coding sequences of Glyma17g22892
>Glyma17g22892.1   sequence type=CDS   gene model=Glyma17g22892   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGTATAAATGGACCCAAGTTACCTCTGGTGTTTGAAGTGCAGCAGATGCCACATGATTTAACTACAGAAGGATGTCCAAAGAACAATTTTCAAAACAGTTGTATATTCAATAAGGCTCCAATTTCAGCAATCACGAATAAGAAAACATACGAGGAAGATACCTGTGTCGACAAGTCAAATCCTCAGCATGAAAGTTTTATCAAGAGATACAGCATCAAGTTGGCATCCACAAGTGCAGACCTCTGGATGGGTATTGTATTGCTCTTCATAGACATTATGATTGCTTTAGAAATACTTGTAAGGCAAGTGCACGGCTGCAAGGCTTCCGGGAGTCAAAGAAAGAGACTAAACAGAACCATGACTGACATTATTGTGCTAATTCCAGTGACAATCTTGATGCTAATTCCTGTAACAGCTGTAGGCCATGCAGCTATTCTAGCAGCTATCAAGAAGTATATGACATTAAATCTTTTGGATATATACTTTTAG

>Glyma17g22892.2   sequence type=CDS   gene model=Glyma17g22892   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGTATAAATGGACCCAAGTTACCTCTGGTGTTTGAAGTGCAGCAGATGCCACATGATTTAACTACAGAAGGATGTCCAAAGAACAATTTTCAAAACAGTTGTATATTCAATAAGGCTCCAATTTCAGCAATCACGAATAAGAAAACATACGAGGAAGATACCTGTGTCGACAAGTCAAATCCTCAGCATGAAAGTTTTATCAAGAGATACAGCATCAAGTTGGCATCCACAAGTGCAGACCTCTGGATGGGTATTGTATTGCTCTTCATAGACATTATGATTGCTTTAGAAATACTTGTAAGGCAAGTGCACGGCTGCAAGGCTTCCGGGAGTCAAAGAAAGAGACTAAACAGAACCATGACTGACATTATTGTGCTAATTCCAGTGACAATCTTGATGCTAATTCCTGTAACAGCTGTAGGCCATGCAGCTATTCTAGCAGCTATCAAGAAGTATATGACATTAAATCTTTTGGATATATACTTTTAG
Predicted protein sequences of Glyma17g22892
>Glyma17g22892.1   sequence type=predicted peptide   gene model=Glyma17g22892   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSINGPKLPLVFEVQQMPHDLTTEGCPKNNFQNSCIFNKAPISAITNKKTYEEDTCVDKSNPQHESFIKRYSIKLASTSADLWMGIVLLFIDIMIALEILVRQVHGCKASGSQRKRLNRTMTDIIVLIPVTILMLIPVTAVGHAAILAAIKKYMTLNLLDIYF*

>Glyma17g22892.2   sequence type=predicted peptide   gene model=Glyma17g22892   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSINGPKLPLVFEVQQMPHDLTTEGCPKNNFQNSCIFNKAPISAITNKKTYEEDTCVDKSNPQHESFIKRYSIKLASTSADLWMGIVLLFIDIMIALEILVRQVHGCKASGSQRKRLNRTMTDIIVLIPVTILMLIPVTAVGHAAILAAIKKYMTLNLLDIYF*






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