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Report for Sequence Feature Glyma17g22580

Feature Type:gene_model
Chromosome:Gm17
Start:22222601
stop:22222825
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g22580
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G76650AT Annotation by Michelle Graham. TAIR10: calmodulin-like 38 | chr1:28766909-28767442 REVERSE LENGTH=177 SoyBaseE_val: 1.00E-16ISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009620GO-bp Annotation by Michelle Graham. GO Biological Process: response to fungus SoyBaseN/AISS
GO:0009695GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process SoyBaseN/AISS
GO:0009723GO-bp Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus SoyBaseN/AISS
GO:0009738GO-bp Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0009873GO-bp Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0035556GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0005509GO-mf Annotation by Michelle Graham. GO Molecular Function: calcium ion binding SoyBaseN/AISS
PTHR10891Panther CALMODULIN JGI ISS
PTHR10891:SF141Panther CALCIUM-BINDING PROTEIN JGI ISS
PF00036PFAM EF hand JGI ISS
UniRef100_G7J5J1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin-like protein n=2 Tax=Medicago truncatula RepID=G7J5J1_MEDTR SoyBaseE_val: 4.00E-30ISS
UniRef100_I1MW34UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MW34_SOYBN SoyBaseE_val: 2.00E-44ISS

Expression Patterns of Glyma17g22580
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g22580 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma17g22580
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g22580
>Glyma17g22580.1   sequence type=CDS   gene model=Glyma17g22580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATTTGGGGGAGAGGAGCAGAAGTTGAATGACTTGAAGGTAACTTTTGACATGTGTGACACTGAAAGCTGTGGGTTTATAACCCCTGAGATCTTGAAAAAGATGCTTAAGAAGATGGGTGAGTCCAAATCCATTGATGAGTGCAAATCTATGATCAAACAATTTGATTTGAATGGGGATGGTGTCCTAAGCTTTGAAGAATTCAGAATTATGATGCAGTGA
Predicted protein sequences of Glyma17g22580
>Glyma17g22580.1   sequence type=predicted peptide   gene model=Glyma17g22580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEFGGEEQKLNDLKVTFDMCDTESCGFITPEILKKMLKKMGESKSIDECKSMIKQFDLNGDGVLSFEEFRIMMQ*






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