Glyma17g21945 - SoyBase

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Report for Sequence Feature Glyma17g21945

Feature Type:	gene_model
Chromosome:	Gm17
Start:	21607824
stop:	21608200
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g21945

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G55560	AT	Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein \| chr5:22506477-22507757 REVERSE LENGTH=314	SoyBase	E_val: 8.00E-48	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0010260	GO-bp	Annotation by Michelle Graham. GO Biological Process: organ senescence	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
PTHR13902	Panther	SERINE/THREONINE-PROTEIN KINASE WNK (WITH NO LYSINE)-RELATED	JGI		ISS
PTHR13902:SF37	Panther	PROTEIN KINASE FAMILY PROTEIN	JGI		ISS
UniRef100_G7K4D4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MAP kinase-like protein n=1 Tax=Medicago truncatula RepID=G7K4D4_MEDTR	SoyBase	E_val: 2.00E-50	ISS
UniRef100_UPI000233E3CF	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E3CF related cluster n=1 Tax=unknown RepID=UPI000233E3CF	SoyBase	E_val: 8.00E-73	ISS

Expression Patterns of Glyma17g21945

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g21945 not represented in the dataset	Glyma17g21945 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g21945 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma17g21945

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g21945

Limit To All Plant Sequences

>Glyma17g21945.1   sequence type=CDS   gene model=Glyma17g21945   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGTTTGGCAGCAATTGTGGGCAAGAACCATTGTGCACACACGATTCTTGGCACACCAAAATTTATGGCTCCAAAGTTATACGATGAAGACTACACAGAATTGATGGTGACAGTAGAGATTCCTTATAGTGAATATGACAATGTTGCTAAGATATACAAGAAGGTGTCTTCTGGAGTTAGACCTGCTGCCTTGAACAAGGTCAAAGATCCTGAGGTTAAGGCTTTCATTGAGAAGTGCCTTGCTCAACCAAGGGCTAGGCCTTCTGCAACTAAGCTTGTCAGAGATCCTTTCTTTGATGAGATTGTTGATGATGATGACTGTTCTTGTTCATATCAATAG

Predicted protein sequences of Glyma17g21945

Limit To All Plant Sequences

>Glyma17g21945.1   sequence type=predicted peptide   gene model=Glyma17g21945   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GLAAIVGKNHCAHTILGTPKFMAPKLYDEDYTELMVTVEIPYSEYDNVAKIYKKVSSGVRPAALNKVKDPEVKAFIEKCLAQPRARPSATKLVRDPFFDEIVDDDDCSCSYQ*

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