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Report for Sequence Feature Glyma17g21810

Feature Type:gene_model
Chromosome:Gm17
Start:21273271
stop:21276709
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g21810
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G19970AT Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferase family protein (TAIR:AT5G44820.1); Has 801 Blast hits to 466 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 750; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink). | chr4:10818242-10825343 FORWARD LENGTH=715 SoyBaseE_val: 1.00E-54ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR24015Panther FAMILY NOT NAMED JGI ISS
PTHR24015:SF6Panther SUBFAMILY NOT NAMED JGI ISS
PF03407PFAM Nucleotide-diphospho-sugar transferase JGI ISS
UniRef100_I1MW25UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MW25_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q01K63UniRef Annotation by Michelle Graham. Most informative UniRef hit: H0307D04.3 protein n=1 Tax=Oryza sativa RepID=Q01K63_ORYSA SoyBaseE_val: 9.00E-54ISS

Expression Patterns of Glyma17g21810
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g21810 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g181100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g21810
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g21810
>Glyma17g21810.2   sequence type=CDS   gene model=Glyma17g21810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTAGGCCTAAAGGCCATTAAACCATCATTTTCATTTGGAAGGATGAGAGCATTGAGATTGAGGAATTATGTGTATCTTCCTCTCTTAGCTTTCTTGATCGTGCTGGTATGCTTCCTTCTATATCACTACCCTAGATCGCTTGAAAGGGGTGTCACTAAGGGGGTTCTGCTCAGGCATAAATCAACTTATTACTCAAAAAATCAAGAATTGGATGATGTGCTGAGGAGAGCTATCATGCCAGACAGATCAGTTATCCTAACCATGGTAAATAAATCAATGGCAAGTCCTGGATCTATCCTTGACATTTTACTCCAAAGCTTCAAATCAGGTGATGGGACACAAAGATTGCTGAATCACATGGTGATCATAACCATGGACCCTCATGCTTTTGAGTACTGTAGGTCCTTGCACCCCTATTGCATCCACCCCTCCATATTTCCACATCATTTTGTCACCAAAAGAGGATCCATAATAACAACCCCTGATCAAAATTTATTCACTTGGACAAGAAATGATGTTTTGTTTGAAGTGATTCAATTGGGTTACAGCATAATTTTCACGGAAGCAGATGTACTGTGGCTTAGAAGTCCACTTATAAAGTTAAATCCAAGTAATGAACTCACAATTTCATGTAATGTCTTAAGTGATGGACAAAGTGGAAGTTACCTACACGGTGGGGGAATATTCTTCTTGAAAGCAAATGCCATTTCCCTTGAGTTCTTCAAGTATTGGAAATTGACTAAGTTTATGTTTCCAAACGATCCCGCAGAAGAGTCCTTGTGTAACACAATAAAAGCAAGGCAAGATGCAGCTGACTTGTATGGCTTTCGTGCTCAGCTTGTAAATACAAGCTATTTTGGTGGGTTTTGTCAGCCAAGTAAGAACATGTTAAGGGAGGCTTATACCATTCAAGCTAACTGTTGTGATGATCTAGAAAGCAAAGTTCATGACCTGAGGATTGTTCTTGGTGATTGGATCCGATTCAGAAATCATGCATCAGGGGTCAATGCTTTGGACAAAATGGATTTGAGGTGGCCACTGAAGTGCTCCACAAGAAATTATACTTAG
Predicted protein sequences of Glyma17g21810
>Glyma17g21810.2   sequence type=predicted peptide   gene model=Glyma17g21810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLGLKAIKPSFSFGRMRALRLRNYVYLPLLAFLIVLVCFLLYHYPRSLERGVTKGVLLRHKSTYYSKNQELDDVLRRAIMPDRSVILTMVNKSMASPGSILDILLQSFKSGDGTQRLLNHMVIITMDPHAFEYCRSLHPYCIHPSIFPHHFVTKRGSIITTPDQNLFTWTRNDVLFEVIQLGYSIIFTEADVLWLRSPLIKLNPSNELTISCNVLSDGQSGSYLHGGGIFFLKANAISLEFFKYWKLTKFMFPNDPAEESLCNTIKARQDAADLYGFRAQLVNTSYFGGFCQPSKNMLREAYTIQANCCDDLESKVHDLRIVLGDWIRFRNHASGVNALDKMDLRWPLKCSTRNYT*






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