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Report for Sequence Feature Glyma17g21573

Feature Type:gene_model
Chromosome:Gm17
Start:21065408
stop:21067897
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g21573
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G36930AT Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:17414167-17415945 FORWARD LENGTH=373 SoyBaseE_val: 9.00E-24ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0007623GO-bp Annotation by Michelle Graham. GO Biological Process: circadian rhythm SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0009908GO-bp Annotation by Michelle Graham. GO Biological Process: flower development SoyBaseN/AISS
GO:0010114GO-bp Annotation by Michelle Graham. GO Biological Process: response to red light SoyBaseN/AISS
GO:0010154GO-bp Annotation by Michelle Graham. GO Biological Process: fruit development SoyBaseN/AISS
GO:0010187GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of seed germination SoyBaseN/AISS
GO:0048440GO-bp Annotation by Michelle Graham. GO Biological Process: carpel development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PTHR10014Panther BASIC HELIX-LOOP-HELIX/LEUCINE ZIPPER TRANSCRIPTION FACTOR JGI ISS
PTHR10014:SF30Panther BASIC HELIX-LOOP-HELIX (BHLH) FAMILY PROTEIN JGI ISS
PTHR12565Panther STEROL REGULATORY ELEMENT-BINDING PROTEIN JGI ISS
PF00010PFAM Helix-loop-helix DNA-binding domain JGI ISS
UniRef100_G7I3I4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor SPATULA n=1 Tax=Medicago truncatula RepID=G7I3I4_MEDTR SoyBaseE_val: 8.00E-27ISS
UniRef100_UPI000233B420UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233B420 related cluster n=1 Tax=unknown RepID=UPI000233B420 SoyBaseE_val: 2.00E-30ISS

Expression Patterns of Glyma17g21573
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g21573 not represented in the dataset
Glyma17g21573 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g21573 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g180800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g21573
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma17g21573
>Glyma17g21573.2   sequence type=transcript   gene model=Glyma17g21573   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAATTTCAAATGTAAATCTTTTCTCAGTTCTCTATTCAACTCAGACTCTTCTGATCCAATGAAACCCCCTTACCCGTTCCCCAAATTGATGGCGTCGACAATAAAGAGCTGAAAGCGCAGATTGAGAGCTACTTCAAGGGTGATGGGCACGTGCTCCCGTCGATCATGGAGGCGACTCTGAAGTGGAAGTTGTCGGGGAAGCTCGAGGGCACCAATGACAAGCTCATGGAGGAGCTCCGCATGTGCCCCCTGGACGATGTCGACGATTGGGACTTCGAGGACATTAACTATAATGATGAGGAGATCAACGATTTGTACAACGCTGACAGAGACATTCCAGGCATCGACTCTGATGTCTTTTCTGCCTCCTCAGAGAAGGAGGAGTAGGATTAAGGAGAAAATGAAAGCCTTGCAGAATTTAATTCCAAATTCCAACAAGACAAACAAAGCTTTAATGCTAGATGAGGCCATAGAATATTTAAAGCAACTCCAACTTCAAGAGCAAGGATTTATAGCCACATTATACTATGTAGAGGAATGTGAAATTCTTACTCAGAACGAATGACGTCGTGGCACTAACCATGGAGGAGGACCCATGCAAAGGATCACAAAGGAAGTGTTGTAAGGTTTACTGTAGTGGTGGTTCTAGTTCCAGTTTGTGTTCATGTTCATGTTTTTCTCTTTGGGATGCGATGATCAATTTTCTTATGATGGCAGTTAAAGTGTGATGGAATTTTACAGTTAAAGAGCCTATAAAGTTTAATGAATTTGGTGAAAGCATTAAACTCAATCTTTTTTTTTCATGGCAAACATTATTTTACTATACTTTGCTTCATTCACATGATGCTACTTTTTTTGGTCAATTAAATGAAAAGGGTGGATAACATTTGATCCTTATGAATCAAGATATAATTGAAAGTGGTGCCTAGAATTTATCTAAAAATATTTTAACTGATATCATTCACATGATGCTATTTCATTTTTCAATTAAATGAAAGAGGTGGGTAACATTTGTAATGAATGTCTTTGGTTAGGTTGGGTGTTAAGCTCGAAACGGATTTGCATCAGGTGAAAGGATGGATTTGGATTTATTTGACAATGACATCAATTTCTTGAATTGTTGTGGTTCTGAGTGTATTCTTGAATTGTTTTGCTTCATTGTGTTAACTGTTAAGAAGCAAGAATTGATAGAATAAAAATTGAAAGATGTTGATGTTGCTATATTAGCTATTTGTGTAGCTTTGGCAAAGGGTATGAACAAGGATGACCTTGCTCGAATGGTAAAGGAAGAAAAAAAAAAGTTGGAAATCATATGGCTGGTCTCATTGCTAAGCTCCATCTTCATAGGAATTGCATGACTTTAGTGTGGATGTTGCTATATTAGTTGTTTGTGTAGCTTATTGCCAAGCTAGACTTTTTTTTGTTACATATGTTAGTTACTGTAACATTAAAAAATACAACACTATCATTACACAGTACACAAATTCACCAAAACAATCAAAGTGTGTTGCTAGGTGCACCCAGCATTTTTGCTGGTGCATCCAGCAATTCATGTAAAAAGACTTATGTACCCCTAGCTTAATTTTTAAAAAACAAAACAATTCAGTATCTCTCCCTCCATCCCTCCCTCCCGTGTTGGCCTTCTTCTTCCTCCTCACCCCTCACCATTTTTTCTTCTTCTTCCTGACCCCTTACCTCACCTCACTCGCGTTCTTCTTCCTTTCACTCTACCCTGGTCTCAAAAAAGCTTCACCCACCATCGTCATCCTCCACGCCGTGTTTGTTCCCCCCGTGAGTGTCGTTGA
Coding sequences of Glyma17g21573
>Glyma17g21573.1   sequence type=CDS   gene model=Glyma17g21573   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAAGCTCATGGAGGAGCTCCGCATGTGCCCCCTGGACGATGTCGACGATTGGGACTTCGAGGACATTAACTATAATGATGAGGAGATCAACGATTTGTACAACGCTGACAGAGACATTCCAGGCATCGACTCTGATGTCTTTTCTGCCTCCTCAGGAAAACCCCAACTTTGTCAATCCCCAACTTCTCTTTCCTCTTCTTTATAGCTCTCAGCAGATACCTATCCCACCACTATGTTCTTCGTCAAAAAGGAGTAGAGCTGTAGAGTTCCATAATTTGTATGAAAAGAGAAGGAGGAGTAGGATTAAGGAGAAAATGAAAGCCTTGCAGAATTTAATTCCAAATTCCAACAAGACAAACAAAGCTTTAATGCTAGATGAGGCCATAGAATATTTAAAGCAACTCCAACTTCAAGAGCAAGGATTTATAGCCACATTATACTATGTAGAGGAATGTGAAATTCTTACTCAGAACGAATGA

>Glyma17g21573.2   sequence type=CDS   gene model=Glyma17g21573   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAAGCTCATGGAGGAGCTCCGCATGTGCCCCCTGGACGATGTCGACGATTGGGACTTCGAGGACATTAACTATAATGATGAGGAGATCAACGATTTGTACAACGCTGACAGAGACATTCCAGGCATCGACTCTGATGTCTTTTCTGCCTCCTCAGAGAAGGAGGAGTAGGATTAAGGAGAAAATGAAAGCCTTGCAGAATTTAATTCCAAATTCCAACAAGACAAACAAAGCTTTAATGCTAGATGAGGCCATAGAATATTTAAAGCAACTCCAACTTCAAGAGCAAGGATTTATAGCCACATTATACTATGTAGAGGAATGTGAAATTCTTACTCAGAACGAATGA
Predicted protein sequences of Glyma17g21573
>Glyma17g21573.1   sequence type=predicted peptide   gene model=Glyma17g21573   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSSWRSSACAPWTMSTIGTSRTLTIMMRRSTICTTLTETFQASTLMSFLPPQENPNFVNPQLLFPLLYSSQQIPIPPLCSSSKRSRAVEFHNLYEKRRRSRIKEKMKALQNLIPNSNKTNKALMLDEAIEYLKQLQLQEQGFIATLYYVEECEILTQNE*

>Glyma17g21573.2   sequence type=predicted peptide   gene model=Glyma17g21573   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSSWRSSACAPWTMSTIGTSRTLTIMMRRSTICTTLTETFQASTLMSFLPPQRRRSRIKEKMKALQNLIPNSNKTNKALMLDEAIEYLKQLQLQEQGFIATLYYVEECEILTQNE*






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