Glyma17g21490 - SoyBase

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Report for Sequence Feature Glyma17g21490

Feature Type:	gene_model
Chromosome:	Gm17
Start:	20820773
stop:	20824958
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g21490

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G66920	AT	Annotation by Michelle Graham. TAIR10: SKU5 similar 17 \| chr5:26722963-26725370 FORWARD LENGTH=546	SoyBase	E_val: 0	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0080167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to karrikin	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0005507	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper ion binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
KOG1263	KOG	Multicopper oxidases	JGI		ISS
PTHR11709	Panther	MULTI-COPPER OXIDASE	JGI		ISS
PTHR11709:SF17	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00394	PFAM	Multicopper oxidase	JGI		ISS
PF07731	PFAM	Multicopper oxidase	JGI		ISS
PF07732	PFAM	Multicopper oxidase	JGI		ISS
UniRef100_B9S8L8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Multicopper oxidase, putative n=1 Tax=Ricinus communis RepID=B9S8L8_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1MW17	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MW17_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g21490

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g21490 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g180400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g21490

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g21490

Limit To All Plant Sequences

>Glyma17g21490.1   sequence type=CDS   gene model=Glyma17g21490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGCACAAGTTTGCTTCATCTATTACTTGGTGTTGTTTTGGCTCTGCTGAGTGTGTCTCTTGTGGAAGGAGAAGATGCATACAAATACTACACGTGGACTGTGACATATGGCATTCTTTCTCCACTAGGTAGTCCTCAGCAGGTGGTTCTTATCGATGGTCAGTTTCCTGGGCCTCAACTAGACTTGGTAACTAATGAAAATGTTGTTCTCAACCTTGTAAACAAGTTAGATGAGCCATTTCTTCTTACTTGGAATGGCATCAAACAAAGGAAAAACTCATGGCAAGATGGGGTATTGGGAACCAATTGCCCCATTCCTCCAAACTCAAATTACACATACAAGTTTCAGGTCAAGGATCAGATTGGAACCTACACATACTTTCCATCGACTTCACTGCATAAAGCAGCTGGAGGGTTTGGAGGACTCAATGTCTACCATAGATCTGTCATCCCAGTTCCTTATCCGTACCCTGATGGAGATTTCACTTTACTCATTGGTGATTGGTACAAGACTAACCACAAGGTATTAAGAGAATCTTTGGATTCTGGAAAATCTCTTGCCTTTCCTGATGGTCTCCTTATCAATGGCCAAGCTCATACAACCATAAATGGGGACCAGGGAAAGACCTATATGTTCAGAATCTCAAATGTGGGCATGTCAACATCAATTAACTTCAGAATCCAGGGTCATCCTCTGAAGCTAGTTGAGATTGAAGGATCACACATTGTCCAGAACACGTACGACACGCTTGATGTGCATGTTGGGCAATCAGCTGCTGTGTTGGTAACCTTAAATCAGCCTCCAAAGGACTACTACATTGTTGCCTCAACAAGATTTTCAAGAAAAGTTCTCACAGCAACTGCAGTGTTACATTATTCAAACTCTAACTCTCCTGCTTCTGGACCCTTGCCTAGTCCCCCAATTTACCAATATCATTGGTCTGTGAAGCAAGCTAGAACCTACAGATGGAATCTGACAGCAAATGCTGCTAGGCCTAATCCACAAGGGTCATACCATTATGGAAAAATAACTCCTACAAAGACAATTGTGTTGTCCAATTCAGCACCTTTGATTAATGGAAAACTTCGTTATGCTGTCAACAAGGTTTCTTATGTTAACTCTGATACACCGCTCAAGCTTGCTGATTACTTCAACATTCCTGGAATCTACAGTGTTGACTCAATCCAAACCCTTCCTTCTGAAAGTACTCCTGCATCCATAGCCACCTCCGTAGTGCCAACTTCTCTCCATGATTTCATTGAGGTTGTTTTTCAGAACAACGAAAATGCCATGCAATCTTGGCATCTTGACGGTTATGACTTTTGGGTCGTGGGTTATGGTTTTGGTCAGTGGACACCAGCCAAAAGAAGAACCTATAATCTAGTTGATGCTCTGACCAGGCACACTACACAGGTATACCCAAATGCTTGGACTACAATATTGGTGTCCTTGGACAATCAAGGTATGTGGAATCTGAGGTCTGCAATATGGGAAAGGCAGTATCTTGGGCAACAATTATATCTCAGGGTTTGGACTTCTGAGCGCAGCCTTGCTAATGAATATGATATTCCCAACAATGCATTGCTTTGTGGCAAAGCTGTTGGACATAACAACCCCTAG

Predicted protein sequences of Glyma17g21490

Limit To All Plant Sequences

>Glyma17g21490.1   sequence type=predicted peptide   gene model=Glyma17g21490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSTSLLHLLLGVVLALLSVSLVEGEDAYKYYTWTVTYGILSPLGSPQQVVLIDGQFPGPQLDLVTNENVVLNLVNKLDEPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQVKDQIGTYTYFPSTSLHKAAGGFGGLNVYHRSVIPVPYPYPDGDFTLLIGDWYKTNHKVLRESLDSGKSLAFPDGLLINGQAHTTINGDQGKTYMFRISNVGMSTSINFRIQGHPLKLVEIEGSHIVQNTYDTLDVHVGQSAAVLVTLNQPPKDYYIVASTRFSRKVLTATAVLHYSNSNSPASGPLPSPPIYQYHWSVKQARTYRWNLTANAARPNPQGSYHYGKITPTKTIVLSNSAPLINGKLRYAVNKVSYVNSDTPLKLADYFNIPGIYSVDSIQTLPSESTPASIATSVVPTSLHDFIEVVFQNNENAMQSWHLDGYDFWVVGYGFGQWTPAKRRTYNLVDALTRHTTQVYPNAWTTILVSLDNQGMWNLRSAIWERQYLGQQLYLRVWTSERSLANEYDIPNNALLCGKAVGHNNP*

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