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Report for Sequence Feature Glyma17g21221

Feature Type:gene_model
Chromosome:Gm17
Start:20536722
stop:20537767
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g21221
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G11340AT Annotation by Michelle Graham. TAIR10: S-locus lectin protein kinase family protein | chr1:3814116-3817420 REVERSE LENGTH=901 SoyBaseE_val: 2.00E-34ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0048544GO-bp Annotation by Michelle Graham. GO Biological Process: recognition of pollen SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0004713GO-mf Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
GO:0030246GO-mf Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding SoyBaseN/AISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF703Panther JGI ISS
PF07714PFAM Protein tyrosine kinase JGI ISS
UniRef100_G7JF50UniRef Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine protein kinase n=1 Tax=Medicago truncatula RepID=G7JF50_MEDTR SoyBaseE_val: 8.00E-36ISS
UniRef100_UPI000233D1C5UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233D1C5 related cluster n=1 Tax=unknown RepID=UPI000233D1C5 SoyBaseE_val: 1.00E-49ISS

Expression Patterns of Glyma17g21221
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g21221 not represented in the dataset
Glyma17g21221 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g21221 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma17g21221
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g21221
>Glyma17g21221.1   sequence type=CDS   gene model=Glyma17g21221   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGAATATAACAATGAAAGTTATGTGAATGATCTGGATCTGCCATTGCTTGATTTGTCAATAATCATTGCCGCCACAAACAAATTCTCAGAGGGAAACAAGATTGGAGAAGGTGGCTTTGGATCTGTATATTGGGGAAAATTAGCCAATGGGCTAGAAATTGCTGTGAAAAGACTCTCAAAGAACTCGGATCAAGGAATTAGTGAGTTTGTAAACGAAGTAAAACTGATTGCAAGAGTTCAACACAGAAATCTTGTAAAGCTTCTTCGCTGTTGCATTCAAAAAAAAGAGAAAATGCTAGTTTAA
Predicted protein sequences of Glyma17g21221
>Glyma17g21221.1   sequence type=predicted peptide   gene model=Glyma17g21221   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEYNNESYVNDLDLPLLDLSIIIAATNKFSEGNKIGEGGFGSVYWGKLANGLEIAVKRLSKNSDQGISEFVNEVKLIARVQHRNLVKLLRCCIQKKEKMLV*






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