Glyma17g21163 - SoyBase

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Report for Sequence Feature Glyma17g21163

Feature Type:	gene_model
Chromosome:	Gm17
Start:	20417926
stop:	20419834
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g21163

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G28050	AT	Annotation by Michelle Graham. TAIR10: nodulin MtN21 /EamA-like transporter family protein \| chr3:10442984-10445216 FORWARD LENGTH=367	SoyBase	E_val: 4.00E-49	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
UniRef100_B9SZH1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxin-induced protein 5NG4, putative n=1 Tax=Ricinus communis RepID=B9SZH1_RICCO	SoyBase	E_val: 5.00E-70	ISS
UniRef100_UPI000233F1FB	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F1FB related cluster n=1 Tax=unknown RepID=UPI000233F1FB	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g21163

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g21163 not represented in the dataset	Glyma17g21163 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g21163 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g179700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g21163

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g21163

Limit To All Plant Sequences

>Glyma17g21163.1   sequence type=CDS   gene model=Glyma17g21163   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTCAGGTTTTTTGGAATAGGTTACTGCTCTCCCATTTTGGCCACTGCAATGTCTGATTTAATCCCTGCTTTTACCTTCATACTTGCCATCGTCTTCAGGATCAAAAAATTGGATTGGAAAACTAACAGTACTTGGGCCAAGTCCATTGGCACATTGGTATCAATCGCTGGAGCCTTAATAATTACTCTGTACAAAGGCCAAGCAGTCATAAAGAATCATCCATCAAATAAATTGTTCCCCAAAAAACATGTTTCATCTGAACAATTTGACTGGGTATTAGGGGCAGTGTTGCTTGCGGGTCATAGCTTTGTTCTCTCATTGTTGTTCATAGTTCAGACATGGATAATCAGAAATTACCCTACAGAGCTTGTGATAGTGCTCACTCGCAGTACATTAGTTGCTATGCTATCTATCCCACCTTCACTGATTTCGGTAACAGATCCAAAAGCTTTGAGATTAGGATTTGATGTGAATTTGATAGCTATTGCATTCCAAGCAATTTTTGGTGTATCCCTTCGAAGTATTGTTCATATATGGGTCATGAGCAAGAAGGGCCCTCTCTATGTTGCAATGGTTAAGTCAATTGGAATCATCTTTGCGGTCATCATGGGAATTGCATTTCTTGGTGACTCTATCTATCTTGGAAGGCATACGTTTCTTTCATGTCTTAATCATATGAAAAATTGGAGTGTGCTTGGAGCAGCCATTATTTGGGGGAAAAGCCAAGAGCAAGCAAAGGAAGAGTGTGAAGTCTATGATGACTCGGAATCATACTCACCCGTTGTCCCTCTTTTGAAGAACAAGAGAATGGAGGAATAG

Predicted protein sequences of Glyma17g21163

Limit To All Plant Sequences

>Glyma17g21163.1   sequence type=predicted peptide   gene model=Glyma17g21163   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLRFFGIGYCSPILATAMSDLIPAFTFILAIVFRIKKLDWKTNSTWAKSIGTLVSIAGALIITLYKGQAVIKNHPSNKLFPKKHVSSEQFDWVLGAVLLAGHSFVLSLLFIVQTWIIRNYPTELVIVLTRSTLVAMLSIPPSLISVTDPKALRLGFDVNLIAIAFQAIFGVSLRSIVHIWVMSKKGPLYVAMVKSIGIIFAVIMGIAFLGDSIYLGRHTFLSCLNHMKNWSVLGAAIIWGKSQEQAKEECEVYDDSESYSPVVPLLKNKRMEE*

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