SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G09060 | AT | Annotation by Michelle Graham. TAIR10: Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase | chr1:2921235-2925254 REVERSE LENGTH=944 | SoyBase | E_val: 2.00E-67 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR12549 | Panther | JUMONJI DOMAIN CONTAINING PROTEIN-RELATED INCLUDING HAIRLESS | JGI | ISS | |
| PTHR12549:SF1 | Panther | HAIRLESS PROTEIN | JGI | ISS | |
| UniRef100_G7I8M9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: PsbP-like protein n=1 Tax=Medicago truncatula RepID=G7I8M9_MEDTR | SoyBase | E_val: 8.00E-141 | ISS |
| UniRef100_I1LBB1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LBB1_SOYBN | SoyBase | E_val: 2.00E-176 | ISS |
|
Glyma17g21146 not represented in the dataset |
Glyma17g21146 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g179600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g21146.1 sequence type=CDS gene model=Glyma17g21146 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTCATATGGAGAGGGATTCTAGAGGCAACAGATGAGAAAGCGAAAGATGAAAACAGGATGGATTCTGAGATTGATATTGAGCTTGCTCAGTTCATGAAAGGATACTTCAAAGGGCTTATTCTTGAAAATGGTTGGCCACAGTTATTGAAATTGAAAGATTGGCCTTCACCTAGTATGGCTGAAGAATTTCTGTTGTACCAAAGACCTGAGTTTATCAACAAACTACCTTTACTTCAGTATATTCACTCCAAGTGGGGCCTTCTCAATGTTGCAGCTAAATTGCCTCATTACTCCCTGCAGAATGATGTAGGACCCAAGATATATATATGTTATGGGATTAGTGATGAACTTGGTAGAGGTGACTCAGTGACAAATCTCCACTTCAATATGCGTGACATGGTGTACCTTTTGGTTCATACAAATGAAGAATTTGAGCCAAAAGAATCACATGGGGATCCTCAAATATCCTCAAGGGGGAGTTCACCTGATTCCTCACTTAGTACAAAAAGTAGTGGACTGGAAATAGACTCAAACCAGAATAAGTCAATTATGGATCAAGGGTTTGAAATTTATTCTAGTGCTGAAGGTAATACGGCCAATTGTAAACTTCCATTCAATCAAAATGGAGACGTCTATGAGAAAACACATCCTGGAGTTCTTTGGGGTGTTTTTCATCGGCAGGATGTTCCAATATTGACTAAAAATTTGAAAATACATTGGAAGGAATTTGGGAAGTCAGATGATCTTGGAAATGAATTTGTTGAATGGCCTCTTTATGATGGAGCTATTTTTCTTGACAAACACCATAAAAGAAATTTGAAGGAAGAATTTGGTAAGATCTTATGTTTTTCTTTCTTTCTTTGA
>Glyma17g21146.1 sequence type=predicted peptide gene model=Glyma17g21146 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVIWRGILEATDEKAKDENRMDSEIDIELAQFMKGYFKGLILENGWPQLLKLKDWPSPSMAEEFLLYQRPEFINKLPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYICYGISDELGRGDSVTNLHFNMRDMVYLLVHTNEEFEPKESHGDPQISSRGSSPDSSLSTKSSGLEIDSNQNKSIMDQGFEIYSSAEGNTANCKLPFNQNGDVYEKTHPGVLWGVFHRQDVPILTKNLKIHWKEFGKSDDLGNEFVEWPLYDGAIFLDKHHKRNLKEEFGKILCFSFFL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
