Glyma17g21130 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma17g21130

Feature Type:	gene_model
Chromosome:	Gm17
Start:	20345778
stop:	20350785
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g21130

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G66900	AT	Annotation by Michelle Graham. TAIR10: Disease resistance protein (CC-NBS-LRR class) family \| chr5:26714931-26717757 REVERSE LENGTH=809	SoyBase	E_val: 7.00E-150	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0043531	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ADP binding	SoyBase	N/A	ISS
KOG4658	KOG	Apoptotic ATPase	JGI		ISS
PTHR23155	Panther	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	JGI		ISS
PTHR23155:SF237	Panther	DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS), PUT	JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
PF00931	PFAM	NB-ARC domain	JGI		ISS
UniRef100_G7LGB3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cc-nbs-lrr resistance protein n=1 Tax=Medicago truncatula RepID=G7LGB3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MW11	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MW11_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g21130

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g21130 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g179500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g21130

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g21130

Limit To All Plant Sequences

>Glyma17g21130.2   sequence type=transcript   gene model=Glyma17g21130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATAATTTCAATTGTTGATTGTGCTTTACGGTGCAGCTCTCATTAACAAGAAGAACACATAACAGAAAGACACATCCAAAGGAGGCATCAAGCTCGTAACTTCAATTAATTAAGAGAAAGGACTCGAAAAGTTGAGTTATTCATGGAAGAGACGGCACAACAAGTAAAACGTCCTTTTGATGTTCCTGAAGAACCAGAATTCATTGTTGGGTTGGATGCACCATTGAGTGAGTTGAAAATGGAACTTCTTAAAGAAGGCGTGTCCATCATTGTGCTGACTGGTTTAGGTGGATCGGGAAAAACCACTTTGGTTACAAAGCTTTGTTGGGATGAACTAGTCATAGGTAAATTCAAGGGAAATATTTTATTTGTCACCATCTCAAAAACGCCTAAGCTGAAGATTATCATCGAAAGACTATTTGAATATTATGGGTGTCAAGTGCCTGCGTTTCAAAGCGATGAAGATGCAGTTAATCATTTGGGAATTTTGCTGAGGAAAATTGATGTAAGTCCAATGTTGTTGGTCTTGGATGATGTTTGGCCTGGCTCAGAAGGCTTCATTGAGAAAGTCAAAGTTCAGATATCAGATTATAAAATTTTGGTGACTTCAAGGGTAGCATTTCCTAGATTTGGCACTCCATTTATCTTAAAAAATCTTGTTCATGAAGATGCAATGACCCTTTTTCGTCACCATGCACTCTTAGAAAAAAACAGCTCAAATATTCCTGAAGAAGTTGTCCAAAAGATTGTTAGACATTGTAAGGGTTTAAATTTACCGCTTGTCATAAAAGTGATTGGTAGATCACTAAGTAATCGACCATACGAGTTGTGGCAAAAGATGGTGGAGCAATTGTCACAAGGTCATTCTATACTTGATTCTAACACTGAATTACTTACTTCCTTCCAAAAGATCTTAGATGTCTTGGAAGATAATCCCACCATCAAAGAGTGCTTCATGGACTTAGCTTTATTTCCTGAAGACCAAAGAATTCCTGTTGCTGCTCTTGTTGATATGTGGGTTGAGTTGTATGGACTAGATAATGACGGCATAGAAACAGTGGCCATTGTCAACAAATTAGCTTCCATGAATCTGGTTAATGTCTTAGTAACAAGGAAAAATACCAGTGACACAGACAGTTACTACTACAATAACCATTTCATCATCCTTCATGATATCCTAAGAGACTTCGGAATTCATCAAAGCAACCAGGAACAAGTTGAACAGAGAAAAAGACTGATGATTGACATAACAGAAAATAAACCTGAATGGTGGCCTAGAGAAAAACAGATCCCTGCACAGACATTGTCTATATCAACTGATGAAACTTGCACATCATATTCGTCCCACCTGCAACCTGCTCAAGCTGAGGTTCTGATTTTAAACCTTCAAACTAATCAGTGCACCTTTCCAAAGTTACTGAAAGAAATGAGGAAACTAAAAGTTCTGATAGTCATGCATTATGGTTTCCATCCTTCTAAAATGAACAATTTAGAGTTGTTTGGCTCATTATCCCACCTTAAAAGAATCAGATTCGAGCGGATTTGGGTTCCTCCCTTTGTCACATTGAAGAATCTTAAAAAGTTATCCCTCTACTTGTGTAATACAAGACAGGCTTTTGGAAACAGAAACATGCTAATTTCATATGCTTTTCCAAATCTAGTAGATTTGAATGTTGACTATTGCAAAGATTTGGTAGAATTGCCTAAGGGGCTATGTGATATCACCACCTTGAAGATGCTCAGTATTACCAATTGCCATAAGCTCTCTGCATTACCTCAAGAAATTGGAAACTTGGACAATTTGAAACTTCGAAGGCTAAGTTCTTGTACTGATTTGGAAGAGATACCAAATTCTATTGGAAAACTTTCAAATCTAAGACATATGGACATCTCAAACTGCATTAACCTTCCAAATTTACCAGAGAACTTTGGTAATCTTTGCAATCTAAGAAATCTGTACATGACAAGTTGTGCAAGGTGTGAATTGCCACCCTCGATTGTCAATCTAAAGAATTTAAAGGAGGTGGTATGTGATGAAGAGACGACTGTTTCGTGGGAAGCTTTCAAAGATATGCTTCCTAATCTGAAGATATATGTTCCTCAAATTGATGTCAACTTGAATTGGCTTCATGAAATTCACTCCTAAGTCCTTATACCTGTTTCATGCTACATTCATTGTGTTTGCAAGTTGTGGTTGATCACACCAGAAAGTGAAGAAAACAAATAAGTCTTGGTGTTGCACAATTTTATGGTAAGACTTTAAAAGGAAACTTCTATATCTATGTTGGTCGGTGCCGAAGAAGACAATTGGTTTGTTGTTAAGGAACTAGAGAAACAAAAATTCTATGTTATATGTCTAAGGCAAAACAGGGAAAAAGATTGTTATTGTTTAGGTTGATTGCCTGTATATTGTGAAGTGTTAGGATATTGCTTATTAGTACAAATTCGTGTATATTGTTTTATCATAAATAATCAAATTTCTTTTATTTTTTAAATTACAATTGAG

Coding sequences of Glyma17g21130

Limit To All Plant Sequences

>Glyma17g21130.1   sequence type=CDS   gene model=Glyma17g21130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATAGAGAAAGGACTCGAAAAGTTGAGTTATTCATGGAAGAGACGGCACAACAAGTAAAACGTCCTTTTGATGTTCCTGAAGAACCAGAATTCATTGTTGGGTTGGATGCACCATTGAGTGAGTTGAAAATGGAACTTCTTAAAGAAGGCGTGTCCATCATTGTGCTGACTGGTTTAGGTGGATCGGGAAAAACCACTTTGGTTACAAAGCTTTGTTGGGATGAACTAGTCATAGGTAAATTCAAGGGAAATATTTTATTTGTCACCATCTCAAAAACGCCTAAGCTGAAGATTATCATCGAAAGACTATTTGAATATTATGGGTGTCAAGTGCCTGCGTTTCAAAGCGATGAAGATGCAGTTAATCATTTGGGAATTTTGCTGAGGAAAATTGATGTAAGTCCAATGTTGTTGGTCTTGGATGATGTTTGGCCTGGCTCAGAAGGCTTCATTGAGAAAGTCAAAGTTCAGATATCAGATTATAAAATTTTGGTGACTTCAAGGGTAGCATTTCCTAGATTTGGCACTCCATTTATCTTAAAAAATCTTGTTCATGAAGATGCAATGACCCTTTTTCGTCACCATGCACTCTTAGAAAAAAACAGCTCAAATATTCCTGAAGAAGTTGTCCAAAAGATTGTTAGACATTGTAAGGGTTTAAATTTACCGCTTGTCATAAAAGTGATTGGTAGATCACTAAGTAATCGACCATACGAGTTGTGGCAAAAGATGGTGGAGCAATTGTCACAAGGTCATTCTATACTTGATTCTAACACTGAATTACTTACTTCCTTCCAAAAGATCTTAGATGTCTTGGAAGATAATCCCACCATCAAAGAGTGCTTCATGGACTTAGCTTTATTTCCTGAAGACCAAAGAATTCCTGTTGCTGCTCTTGTTGATATGTGGGTTGAGTTGTATGGACTAGATAATGACGGCATAGAAACAGTGGCCATTGTCAACAAATTAGCTTCCATGAATCTGGTTAATGTCTTAGTAACAAGGAAAAATACCAGTGACACAGACAGTTACTACTACAATAACCATTTCATCATCCTTCATGATATCCTAAGAGACTTCGGAATTCATCAAAGCAACCAGGAACAAGTTGAACAGAGAAAAAGACTGATGATTGACATAACAGAAAATAAACCTGAATGGTGGCCTAGAGAAAAACAGATCCCTGCACAGACATTGTCTATATCAACTGATGAAACTTGCACATCATATTCGTCCCACCTGCAACCTGCTCAAGCTGAGGTTCTGATTTTAAACCTTCAAACTAATCAGTGCACCTTTCCAAAGTTACTGAAAGAAATGAGGAAACTAAAAGTTCTGATAGTCATGCATTATGGTTTCCATCCTTCTAAAATGAACAATTTAGAGTTGTTTGGCTCATTATCCCACCTTAAAAGAATCAGATTCGAGCGGATTTGGGTTCCTCCCTTTGTCACATTGAAGAATCTTAAAAAGTTATCCCTCTACTTGTGTAATACAAGACAGGCTTTTGGAAACAGAAACATGCTAATTTCATATGCTTTTCCAAATCTAGTAGATTTGAATGTTGACTATTGCAAAGATTTGGTAGAATTGCCTAAGGGGCTATGTGATATCACCACCTTGAAGATGCTCAGTATTACCAATTGCCATAAGCTCTCTGCATTACCTCAAGAAATTGGAAACTTGGACAATTTGAAACTTCGAAGGCTAAGTTCTTGTACTGATTTGGAAGAGATACCAAATTCTATTGGAAAACTTTCAAATCTAAGACATATGGACATCTCAAACTGCATTAACCTTCCAAATTTACCAGAGAACTTTGGTAATCTTTGCAATCTAAGAAATCTGTACATGACAAGTTGTGCAAGGTGTGAATTGCCACCCTCGATTGTCAATCTAAAGAATTTAAAGGAGGTGGTATGTGATGAAGAGACGACTGTTTCGTGGGAAGCTTTCAAAGATATGCTTCCTAATCTGAAGATATATGTTCCTCAAATTGATGTCAACTTGAATTGGCTTCATGAAATTCACTCCTAA

>Glyma17g21130.2   sequence type=CDS   gene model=Glyma17g21130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAGACGGCACAACAAGTAAAACGTCCTTTTGATGTTCCTGAAGAACCAGAATTCATTGTTGGGTTGGATGCACCATTGAGTGAGTTGAAAATGGAACTTCTTAAAGAAGGCGTGTCCATCATTGTGCTGACTGGTTTAGGTGGATCGGGAAAAACCACTTTGGTTACAAAGCTTTGTTGGGATGAACTAGTCATAGGTAAATTCAAGGGAAATATTTTATTTGTCACCATCTCAAAAACGCCTAAGCTGAAGATTATCATCGAAAGACTATTTGAATATTATGGGTGTCAAGTGCCTGCGTTTCAAAGCGATGAAGATGCAGTTAATCATTTGGGAATTTTGCTGAGGAAAATTGATGTAAGTCCAATGTTGTTGGTCTTGGATGATGTTTGGCCTGGCTCAGAAGGCTTCATTGAGAAAGTCAAAGTTCAGATATCAGATTATAAAATTTTGGTGACTTCAAGGGTAGCATTTCCTAGATTTGGCACTCCATTTATCTTAAAAAATCTTGTTCATGAAGATGCAATGACCCTTTTTCGTCACCATGCACTCTTAGAAAAAAACAGCTCAAATATTCCTGAAGAAGTTGTCCAAAAGATTGTTAGACATTGTAAGGGTTTAAATTTACCGCTTGTCATAAAAGTGATTGGTAGATCACTAAGTAATCGACCATACGAGTTGTGGCAAAAGATGGTGGAGCAATTGTCACAAGGTCATTCTATACTTGATTCTAACACTGAATTACTTACTTCCTTCCAAAAGATCTTAGATGTCTTGGAAGATAATCCCACCATCAAAGAGTGCTTCATGGACTTAGCTTTATTTCCTGAAGACCAAAGAATTCCTGTTGCTGCTCTTGTTGATATGTGGGTTGAGTTGTATGGACTAGATAATGACGGCATAGAAACAGTGGCCATTGTCAACAAATTAGCTTCCATGAATCTGGTTAATGTCTTAGTAACAAGGAAAAATACCAGTGACACAGACAGTTACTACTACAATAACCATTTCATCATCCTTCATGATATCCTAAGAGACTTCGGAATTCATCAAAGCAACCAGGAACAAGTTGAACAGAGAAAAAGACTGATGATTGACATAACAGAAAATAAACCTGAATGGTGGCCTAGAGAAAAACAGATCCCTGCACAGACATTGTCTATATCAACTGATGAAACTTGCACATCATATTCGTCCCACCTGCAACCTGCTCAAGCTGAGGTTCTGATTTTAAACCTTCAAACTAATCAGTGCACCTTTCCAAAGTTACTGAAAGAAATGAGGAAACTAAAAGTTCTGATAGTCATGCATTATGGTTTCCATCCTTCTAAAATGAACAATTTAGAGTTGTTTGGCTCATTATCCCACCTTAAAAGAATCAGATTCGAGCGGATTTGGGTTCCTCCCTTTGTCACATTGAAGAATCTTAAAAAGTTATCCCTCTACTTGTGTAATACAAGACAGGCTTTTGGAAACAGAAACATGCTAATTTCATATGCTTTTCCAAATCTAGTAGATTTGAATGTTGACTATTGCAAAGATTTGGTAGAATTGCCTAAGGGGCTATGTGATATCACCACCTTGAAGATGCTCAGTATTACCAATTGCCATAAGCTCTCTGCATTACCTCAAGAAATTGGAAACTTGGACAATTTGAAACTTCGAAGGCTAAGTTCTTGTACTGATTTGGAAGAGATACCAAATTCTATTGGAAAACTTTCAAATCTAAGACATATGGACATCTCAAACTGCATTAACCTTCCAAATTTACCAGAGAACTTTGGTAATCTTTGCAATCTAAGAAATCTGTACATGACAAGTTGTGCAAGGTGTGAATTGCCACCCTCGATTGTCAATCTAAAGAATTTAAAGGAGGTGGTATGTGATGAAGAGACGACTGTTTCGTGGGAAGCTTTCAAAGATATGCTTCCTAATCTGAAGATATATGTTCCTCAAATTGATGTCAACTTGAATTGGCTTCATGAAATTCACTCCTAA

Predicted protein sequences of Glyma17g21130

Limit To All Plant Sequences

>Glyma17g21130.1   sequence type=predicted peptide   gene model=Glyma17g21130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNRERTRKVELFMEETAQQVKRPFDVPEEPEFIVGLDAPLSELKMELLKEGVSIIVLTGLGGSGKTTLVTKLCWDELVIGKFKGNILFVTISKTPKLKIIIERLFEYYGCQVPAFQSDEDAVNHLGILLRKIDVSPMLLVLDDVWPGSEGFIEKVKVQISDYKILVTSRVAFPRFGTPFILKNLVHEDAMTLFRHHALLEKNSSNIPEEVVQKIVRHCKGLNLPLVIKVIGRSLSNRPYELWQKMVEQLSQGHSILDSNTELLTSFQKILDVLEDNPTIKECFMDLALFPEDQRIPVAALVDMWVELYGLDNDGIETVAIVNKLASMNLVNVLVTRKNTSDTDSYYYNNHFIILHDILRDFGIHQSNQEQVEQRKRLMIDITENKPEWWPREKQIPAQTLSISTDETCTSYSSHLQPAQAEVLILNLQTNQCTFPKLLKEMRKLKVLIVMHYGFHPSKMNNLELFGSLSHLKRIRFERIWVPPFVTLKNLKKLSLYLCNTRQAFGNRNMLISYAFPNLVDLNVDYCKDLVELPKGLCDITTLKMLSITNCHKLSALPQEIGNLDNLKLRRLSSCTDLEEIPNSIGKLSNLRHMDISNCINLPNLPENFGNLCNLRNLYMTSCARCELPPSIVNLKNLKEVVCDEETTVSWEAFKDMLPNLKIYVPQIDVNLNWLHEIHS*

>Glyma17g21130.2   sequence type=predicted peptide   gene model=Glyma17g21130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEETAQQVKRPFDVPEEPEFIVGLDAPLSELKMELLKEGVSIIVLTGLGGSGKTTLVTKLCWDELVIGKFKGNILFVTISKTPKLKIIIERLFEYYGCQVPAFQSDEDAVNHLGILLRKIDVSPMLLVLDDVWPGSEGFIEKVKVQISDYKILVTSRVAFPRFGTPFILKNLVHEDAMTLFRHHALLEKNSSNIPEEVVQKIVRHCKGLNLPLVIKVIGRSLSNRPYELWQKMVEQLSQGHSILDSNTELLTSFQKILDVLEDNPTIKECFMDLALFPEDQRIPVAALVDMWVELYGLDNDGIETVAIVNKLASMNLVNVLVTRKNTSDTDSYYYNNHFIILHDILRDFGIHQSNQEQVEQRKRLMIDITENKPEWWPREKQIPAQTLSISTDETCTSYSSHLQPAQAEVLILNLQTNQCTFPKLLKEMRKLKVLIVMHYGFHPSKMNNLELFGSLSHLKRIRFERIWVPPFVTLKNLKKLSLYLCNTRQAFGNRNMLISYAFPNLVDLNVDYCKDLVELPKGLCDITTLKMLSITNCHKLSALPQEIGNLDNLKLRRLSSCTDLEEIPNSIGKLSNLRHMDISNCINLPNLPENFGNLCNLRNLYMTSCARCELPPSIVNLKNLKEVVCDEETTVSWEAFKDMLPNLKIYVPQIDVNLNWLHEIHS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain