Report for Sequence Feature Glyma17g20860
Feature Type: gene_model
Chromosome: Gm17
Start: 19992266
stop: 19996756
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g20860
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G66900 AT
Annotation by Michelle Graham. TAIR10: Disease resistance protein (CC-NBS-LRR class) family | chr5:26714931-26717757 REVERSE LENGTH=809
SoyBase E_val: 7.00E-152 ISS
GO:0006952 GO-bp
Annotation by Michelle Graham. GO Biological Process: defense response
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0043531 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ADP binding
SoyBase N/A ISS
KOG4658
KOG
Apoptotic ATPase
JGI ISS
PTHR23155 Panther
LEUCINE-RICH REPEAT-CONTAINING PROTEIN
JGI ISS
PTHR23155:SF239 Panther
DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS), PUT
JGI ISS
PF00560 PFAM
Leucine Rich Repeat
JGI ISS
PF00931 PFAM
NB-ARC domain
JGI ISS
UniRef100_G7LGB2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Disease resistance protein n=1 Tax=Medicago truncatula RepID=G7LGB2_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1MW08 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MW08_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma17g20860
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma17g20860 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g179200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g20860
Coding sequences of Glyma17g20860
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g20860.1 sequence type=CDS gene model=Glyma17g20860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGCCATTATCTCAAAGAGAAAGGAGGTCCTAGGTTGGTTATCATGGGAGAGACCAAACAACTTGTTACCCTTTTGACACAATTTCAAGAGGCAATGAGGATGGTCAAGGATATAGTGGAAAAAAGCAGATCGAGTAAAACGAGCAAACGATTACTAAGGAAAACCCTCAAGAATATGACTCCTCTACTGCAGGAAATCAATCAATACAATGAACACTTGGACCCACCCAGAGAAGAAATCGACACTCTTATCAAAGAAAAAGACGCCGTAGAAGAGATTGTGTGCTGCTATTCCTGCTCCAGGAGCATTTGGTGGACCAAATTATTCTCTTGGCTTCCACTCTACGGGGATAAATTTTGGAATAACAAGAATTATTCCCTTGCTGCAGATGACAACCAAGTTAAGTATATCAAAAACACACTGTACAAGGTGAAAGAGGTTCTTGAGCGTCTAGACATAGAGAATTTTCAGCTGAAACTCAAAGGTGTTGGATCACCAATCAAGTGTCCTTTTGGTGTTCCTGAAAACCCTGAATTCACTGTTGCGTTGGATCTACCGTTGAGCAAGTTGAAGATGGAGGTTATCAGGGACGGTATGTCCACCCTTTTGTTGACTGGTTTGGGTGGATCTGGTAAAACAACTTTGGCTACAAAGCTCTGTAGGGATGAAGAAGTCAAAGGTAAATTCAAGGAAAATATTTTATTTTTGACCTTCTCACAAACGCCTAAGTTGAAAAGTATTGTAGAAAGACTATTTGATCATTGTGGATACCACGTTCCTGAGTTTATAAGTGATGAAGATGCAATTAAACGGTTGGGAATTTTGCTGCGGAAAATTGAGGGAAGTCCACTTTTGTTGGTACTTGATGATGTTTGGCCTGGATCAGAAGCCCTCATTGAGAAATTTCAATTCCAGATGTCTGATTATAAAATTGTGGTGACTTCAAGGGTTGCATTTCCTAAATTTGGAACCCCATATGTTTTAAAACCACTTGCTCATGAAGATGCAATGACCCTATTCCGACACCATGCTCTCTTGGAAAAAAGCAGTTCAAGTATTCCTGACGAAGAACTTGTCCAAAAGGTTGTGAGATATTGCAAGGGTTTACCCCTCGCCATTAAAGTGATTGGTAGATCACTCAGTCATCGGCCTATTGAGATGTGGCAAAAGATGGTGGAGGAATTTTCACAAGGTCATTCTATACTTGATTCCAATATTGAATTACTTACATGCTTCCAAAAACTCTTGCATGTATTGGAAGATAATCCCAACATCAAGGAGTGCTTCATGGACTTAGGGTTGTTTCCTGAAGACCAAAGAATTCCTCTTCCTGTTCTCATTGATATATGGGCAGTGTTATATGGATATGATGATGACGGCATAGAAGCAACGGACATGATAAATAAATTAGACTCCATGAATCTAGTTAATGTCTTGGTTGCAAGGAAAAATTCAAGTGACTCAGACAATTACTACTACAATAACCACTTTGTCATCCTCCATGATCTTCTAAGAGAGCTTGCAATCTATCAAAACAACCGGGAACCAATTGAAAAGAGAAAAAGACTGATTAATGACATTAATGAAACCGGGGTGAAGCAACAAGGCATGATAGCCCGGTTATTGTCAAAATTTCTCAGATGCAGTGTTAAACAGACACTCCAACAGGTCCCCGCCCGCACATTGTCTATATCAGCTGATGAAACGAACACTTCAGACCAGTCCCACATACAACCATCCCAAGCTGAAGTTCTGGTTTTAAATCTTCAAACTAAGAAGTACTCCTTTCCAGAGTACATGGAGAAAATGAGCGAACTAAAAGTTCTTATCATGACAAATTATGGTTTTCATCCCTGTGAACTTGAAAATTGCAAACTACCCAGCTCTGTATCAAACCTGAAAAGAATCAGACTAGAGCGGATTTCTGTTCCCCACGTAGGGGCATTGAAAAATCTTGAAAAGTTATCCCTCTACATGTGTAGTAACATAAGTCAGATTTTTGAAAATGGTACCATCCCAGTTTCAGATTCATTTCCAAAACTATCAGATTTGAACATTGACTATTGCAAGGATATGGTGGAATTACCTACTGGGATCTGTGATATTACCCCACTAAAGAAGCTCAGTATTACTAATTGCCACAAGCTTAGTTCTCTGCCCCAAAACATTGGAAAGTTGTTGAATTTGGAACTCCTGAACCTAAGTTCCTGCACTGATTTGGAAGAGATACCAGATTCTATTGTAAAACTTTCTAAGCTAAGACTTCTTGACCTCTCAAACTGCATAAGCCTTTCAATTTTACCAGAGGACATTGGTGATCTATGCAATCTCAGGAATCTCAATATGACAAGCTGTGCAAGGTGTGAATTGCCGTACTCAGTAACCAATCTTGAGAATTTAAAAGTGGTGGTATGTGATGAAGAGACAGCTGCTTCATGGGAAGCATTTGAAGCTATGCTTCCAAATCTGAAGTTAGAGGTTCCTCGAGTTGAGGTTAACTTAAACTGGCTTCATTCAATTAGCTCTTAA
Predicted protein sequences of Glyma17g20860
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g20860.1 sequence type=predicted peptide gene model=Glyma17g20860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSHYLKEKGGPRLVIMGETKQLVTLLTQFQEAMRMVKDIVEKSRSSKTSKRLLRKTLKNMTPLLQEINQYNEHLDPPREEIDTLIKEKDAVEEIVCCYSCSRSIWWTKLFSWLPLYGDKFWNNKNYSLAADDNQVKYIKNTLYKVKEVLERLDIENFQLKLKGVGSPIKCPFGVPENPEFTVALDLPLSKLKMEVIRDGMSTLLLTGLGGSGKTTLATKLCRDEEVKGKFKENILFLTFSQTPKLKSIVERLFDHCGYHVPEFISDEDAIKRLGILLRKIEGSPLLLVLDDVWPGSEALIEKFQFQMSDYKIVVTSRVAFPKFGTPYVLKPLAHEDAMTLFRHHALLEKSSSSIPDEELVQKVVRYCKGLPLAIKVIGRSLSHRPIEMWQKMVEEFSQGHSILDSNIELLTCFQKLLHVLEDNPNIKECFMDLGLFPEDQRIPLPVLIDIWAVLYGYDDDGIEATDMINKLDSMNLVNVLVARKNSSDSDNYYYNNHFVILHDLLRELAIYQNNREPIEKRKRLINDINETGVKQQGMIARLLSKFLRCSVKQTLQQVPARTLSISADETNTSDQSHIQPSQAEVLVLNLQTKKYSFPEYMEKMSELKVLIMTNYGFHPCELENCKLPSSVSNLKRIRLERISVPHVGALKNLEKLSLYMCSNISQIFENGTIPVSDSFPKLSDLNIDYCKDMVELPTGICDITPLKKLSITNCHKLSSLPQNIGKLLNLELLNLSSCTDLEEIPDSIVKLSKLRLLDLSNCISLSILPEDIGDLCNLRNLNMTSCARCELPYSVTNLENLKVVVCDEETAASWEAFEAMLPNLKLEVPRVEVNLNWLHSISS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
