SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G71710 | AT | Annotation by Michelle Graham. TAIR10: DNAse I-like superfamily protein | chr1:26973796-26976774 REVERSE LENGTH=664 | SoyBase | E_val: 7.00E-55 | ISS |
| GO:0032957 | GO-bp | Annotation by Michelle Graham. GO Biological Process: inositol trisphosphate metabolic process | SoyBase | N/A | ISS |
| GO:0046854 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol phosphorylation | SoyBase | N/A | ISS |
| GO:0046855 | GO-bp | Annotation by Michelle Graham. GO Biological Process: inositol phosphate dephosphorylation | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0004445 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: inositol-polyphosphate 5-phosphatase activity | SoyBase | N/A | ISS |
| PTHR11200 | Panther | INOSITOL 5-PHOSPHATASE | JGI | ISS | |
| PTHR11200:SF29 | Panther | INOSITOL PHOSPHATASE SKIP | JGI | ISS | |
| PF03372 | PFAM | Endonuclease/Exonuclease/phosphatase family | JGI | ISS | |
| UniRef100_G7KIC8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Type I inositol-1,4,5-trisphosphate 5-phosphatase n=1 Tax=Medicago truncatula RepID=G7KIC8_MEDTR | SoyBase | E_val: 4.00E-76 | ISS |
| UniRef100_I1LDC4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LDC4_SOYBN | SoyBase | E_val: 1.00E-120 | ISS |
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Glyma17g20570 not represented in the dataset |
Glyma17g20570 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g20570.1 sequence type=CDS gene model=Glyma17g20570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGACCAGCCATAGATCATGCTCCTGTTATTGCCAAGCCCTTGACAAAAGATGACCTAATTGACTACTTCATATCTAGTTGCAAGCCCAAACATAACTGGAGGTTAAGGAGGCAAAAGTCAGTAACTTCTAGGTCTCAGTATATAAACAAAAAGGAACTAAGAGTTTGTGTTGGAACATGGAATGTTGGAGGAAAGCTTCCACCTGATGACCTAGATATTGATGATTGGTTAGGCATTAACGAGCTAGCTGATATCTATGTTCTTAGTCTTCAGGAGATTGTACCATTAAATCCGGGTAACATTTTTTGTGTTGAAGACACTCGACCGAGACAGAAATGGGAAAACATTATTCGAGATGCACTTAATAGAGTTAGATCAAAAGCACCAAAGATGAAATCCTTCAGTGATCCCCCATCACCATCAAAATTTAAGCCATCAAATGATGCGCCAGACATAGAAGAAGAAACATTACTTGAAAGTGATGGTGATATTGGTGAGGAAGTCCATCCTTTGGATGAAGAACACAATGTTTATGATGGAGGTGCAAATAAACCAACCACATATGAAGAAGCCTTGAATACTAATTTTCAGGCTTCAGATGTTGTTGATATTGCCAACACAAAAGAGCCAATAGGCAATGATTTAAAGAGACAGATTTATGATGGAAAGAGGTTGAGTAGGCTGAATTGTTTTCATGATTATTTTTATTTTATGAGCTACATATGGAGAATCAAATGGGGGCAAGAAGACCCAATTTGGGGTTTCTACTCAAATCCTAGTGTTGTAAACAGAAAAATGTTTGATGCGAGGAACTTGGGGTTCATGTTTTTACCTTCTATATTTTACACAACTTCATTAGAGCAACAAAAATTTTGA
>Glyma17g20570.1 sequence type=predicted peptide gene model=Glyma17g20570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGPAIDHAPVIAKPLTKDDLIDYFISSCKPKHNWRLRRQKSVTSRSQYINKKELRVCVGTWNVGGKLPPDDLDIDDWLGINELADIYVLSLQEIVPLNPGNIFCVEDTRPRQKWENIIRDALNRVRSKAPKMKSFSDPPSPSKFKPSNDAPDIEEETLLESDGDIGEEVHPLDEEHNVYDGGANKPTTYEEALNTNFQASDVVDIANTKEPIGNDLKRQIYDGKRLSRLNCFHDYFYFMSYIWRIKWGQEDPIWGFYSNPSVVNRKMFDARNLGFMFLPSIFYTTSLEQQKF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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