Glyma17g20570 - SoyBase

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Report for Sequence Feature Glyma17g20570

Feature Type:	gene_model
Chromosome:	Gm17
Start:	19704045
stop:	19706589
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g20570

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G71710	AT	Annotation by Michelle Graham. TAIR10: DNAse I-like superfamily protein \| chr1:26973796-26976774 REVERSE LENGTH=664	SoyBase	E_val: 7.00E-55	ISS
GO:0032957	GO-bp	Annotation by Michelle Graham. GO Biological Process: inositol trisphosphate metabolic process	SoyBase	N/A	ISS
GO:0046854	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol phosphorylation	SoyBase	N/A	ISS
GO:0046855	GO-bp	Annotation by Michelle Graham. GO Biological Process: inositol phosphate dephosphorylation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004445	GO-mf	Annotation by Michelle Graham. GO Molecular Function: inositol-polyphosphate 5-phosphatase activity	SoyBase	N/A	ISS
PTHR11200	Panther	INOSITOL 5-PHOSPHATASE	JGI		ISS
PTHR11200:SF29	Panther	INOSITOL PHOSPHATASE SKIP	JGI		ISS
PF03372	PFAM	Endonuclease/Exonuclease/phosphatase family	JGI		ISS
UniRef100_G7KIC8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Type I inositol-1,4,5-trisphosphate 5-phosphatase n=1 Tax=Medicago truncatula RepID=G7KIC8_MEDTR	SoyBase	E_val: 4.00E-76	ISS
UniRef100_I1LDC4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LDC4_SOYBN	SoyBase	E_val: 1.00E-120	ISS

Expression Patterns of Glyma17g20570

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g20570 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma17g20570

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g20570

Limit To All Plant Sequences

>Glyma17g20570.1   sequence type=CDS   gene model=Glyma17g20570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGACCAGCCATAGATCATGCTCCTGTTATTGCCAAGCCCTTGACAAAAGATGACCTAATTGACTACTTCATATCTAGTTGCAAGCCCAAACATAACTGGAGGTTAAGGAGGCAAAAGTCAGTAACTTCTAGGTCTCAGTATATAAACAAAAAGGAACTAAGAGTTTGTGTTGGAACATGGAATGTTGGAGGAAAGCTTCCACCTGATGACCTAGATATTGATGATTGGTTAGGCATTAACGAGCTAGCTGATATCTATGTTCTTAGTCTTCAGGAGATTGTACCATTAAATCCGGGTAACATTTTTTGTGTTGAAGACACTCGACCGAGACAGAAATGGGAAAACATTATTCGAGATGCACTTAATAGAGTTAGATCAAAAGCACCAAAGATGAAATCCTTCAGTGATCCCCCATCACCATCAAAATTTAAGCCATCAAATGATGCGCCAGACATAGAAGAAGAAACATTACTTGAAAGTGATGGTGATATTGGTGAGGAAGTCCATCCTTTGGATGAAGAACACAATGTTTATGATGGAGGTGCAAATAAACCAACCACATATGAAGAAGCCTTGAATACTAATTTTCAGGCTTCAGATGTTGTTGATATTGCCAACACAAAAGAGCCAATAGGCAATGATTTAAAGAGACAGATTTATGATGGAAAGAGGTTGAGTAGGCTGAATTGTTTTCATGATTATTTTTATTTTATGAGCTACATATGGAGAATCAAATGGGGGCAAGAAGACCCAATTTGGGGTTTCTACTCAAATCCTAGTGTTGTAAACAGAAAAATGTTTGATGCGAGGAACTTGGGGTTCATGTTTTTACCTTCTATATTTTACACAACTTCATTAGAGCAACAAAAATTTTGA

Predicted protein sequences of Glyma17g20570

Limit To All Plant Sequences

>Glyma17g20570.1   sequence type=predicted peptide   gene model=Glyma17g20570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGPAIDHAPVIAKPLTKDDLIDYFISSCKPKHNWRLRRQKSVTSRSQYINKKELRVCVGTWNVGGKLPPDDLDIDDWLGINELADIYVLSLQEIVPLNPGNIFCVEDTRPRQKWENIIRDALNRVRSKAPKMKSFSDPPSPSKFKPSNDAPDIEEETLLESDGDIGEEVHPLDEEHNVYDGGANKPTTYEEALNTNFQASDVVDIANTKEPIGNDLKRQIYDGKRLSRLNCFHDYFYFMSYIWRIKWGQEDPIWGFYSNPSVVNRKMFDARNLGFMFLPSIFYTTSLEQQKF*

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