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Report for Sequence Feature Glyma17g20486

Feature Type:gene_model
Chromosome:Gm17
Start:19603525
stop:19604100
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g20486
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G23660AT Annotation by Michelle Graham. TAIR10: LOB domain-containing protein 10 | chr2:10060242-10061177 REVERSE LENGTH=311 SoyBaseE_val: 6.00E-32ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
PF03195PFAM Protein of unknown function DUF260 JGI ISS
UniRef100_G7K830UniRef Annotation by Michelle Graham. Most informative UniRef hit: LOB domain-containing protein n=1 Tax=Medicago truncatula RepID=G7K830_MEDTR SoyBaseE_val: 2.00E-31ISS
UniRef100_I1MW01UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MW01_SOYBN SoyBaseE_val: 1.00E-75ISS

Expression Patterns of Glyma17g20486
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g20486 not represented in the dataset
Glyma17g20486 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g20486
ParalogEvidenceComments
Glyma05g09950 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g20486 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g178200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g20486
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g20486
>Glyma17g20486.1   sequence type=CDS   gene model=Glyma17g20486   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAACATGCGGCGCATGCAAGTACCAACGGCGAAGGTGCTATTCGGATATTTGCATGTTCGCACCATACTTTCCAGCGGAGAACATCCAGCGGTTCGCGTGCGTGCACCATGTGTTTGGCGGTGGCAACGTAGGAAGCATGCTCAACATCACAAAGCCAAAGTTGCGGGGGTGGGTGGTGAAGACGTTGGCATACCAGGCAGAGGCACGTGTGAGGGACCCTGTGCATGGGTGCGTGGGCCTCATACGGGAGTTGGAAGAGAATCATCGCAAGGTGAAAGAGGACCTTGCCAAGGCCCAAATGGAGCTGGCCCGATACATGGGCCCGGAGTTTGTGAGAAAGCTGAGTCCCAATTATGGTGGTGAGTCTTCTTTGAAGGGTAAGTTTGTGGCACATTTGCAGCCGACAACAATGGAGCTTGACTTTGCTCCCTCTATTGCCATTGATGTTGATGATCTTGATAAGTGGGACCCTTTTCCACCATGGGAAACTAGTTTTCAGAATGTTGGTCCTTCTTCTTCACATGCACATGGTGAAGGTGGGAATAGGAAGGGTAAGGGTGTTGCTCCTTAA
Predicted protein sequences of Glyma17g20486
>Glyma17g20486.1   sequence type=predicted peptide   gene model=Glyma17g20486   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTCGACKYQRRRCYSDICMFAPYFPAENIQRFACVHHVFGGGNVGSMLNITKPKLRGWVVKTLAYQAEARVRDPVHGCVGLIRELEENHRKVKEDLAKAQMELARYMGPEFVRKLSPNYGGESSLKGKFVAHLQPTTMELDFAPSIAIDVDDLDKWDPFPPWETSFQNVGPSSSHAHGEGGNRKGKGVAP*






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