Glyma17g20450 - SoyBase

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Report for Sequence Feature Glyma17g20450

Feature Type:	gene_model
Chromosome:	Gm17
Start:	19471430
stop:	19474526
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g20450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G49570	AT	Annotation by Michelle Graham. TAIR10: Peroxidase superfamily protein \| chr1:18347077-18348712 FORWARD LENGTH=350	SoyBase	E_val: 3.00E-112	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0004601	GO-mf	Annotation by Michelle Graham. GO Molecular Function: peroxidase activity	SoyBase	N/A	ISS
GO:0020037	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heme binding	SoyBase	N/A	ISS
PF00141	PFAM	Peroxidase	JGI		ISS
UniRef100_G7K822	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peroxidase n=1 Tax=Medicago truncatula RepID=G7K822_MEDTR	SoyBase	E_val: 6.00E-150	ISS
UniRef100_I1MVZ8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1MVZ8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g20450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g20450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g177800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g20450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g20450

Limit To All Plant Sequences

>Glyma17g20450.1   sequence type=CDS   gene model=Glyma17g20450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTGCACTTCCAATAATAAGCATTCTTTTGTTCTCTTGATTTTGCTCGTACTCCTTAGTCCTCTAGTACTTTGCCAACTTAGATATGACTACTATTTTGCAACATGTCCAACCCTCACTTTCATTGTTCGAAACTCACTTGTGCTAGCTATGGCAGATGAACAAAGGATTGCAGCTTCTATCTTACGCCTTCATTTCCATGATTGTTTTGCCAATGGATGTGATGCATCTGTGCTACTAGATGATACCAGCAGTTTTAAAGGGGAGAAAAGTGCATTGCCTAATCTAAATTCACTCAAAGGATTTGAGCTTATTGACACAATCAAGTCTCAAATAGAGTGGATATGCCCATCCACCGTGTCATGTGCTGATATACTAGCTCTAGCAGCAAGAGAAGCTGTTAATCTTAGTATAGGAACATATTACTGGCGACCAGCACTTCTTGGTCGTAGAGACGGCACAACAGCTAGTGAGAGCGAGGCTAGTTGGTTACCTTCACCCTCTGACACCTTACAAAACATTACCAACAAGTTCCTTTCAAAGGGTCTTGATATTAAGGATTTAGTAGTGCTCTCAGGAGCCCACACAATAGGCTATGCTCGGTGCTTTACATTGAAGCAAAGGTTTTTCAACTATAAGGACACTGGCAAACCGGATCCATCACTGGATGCTTCACTCTTACAACATTTACAGAAACTATGTCCAGATAACAGTTCTGACACCAATTTGGCTCCCTTGGATCCTGTCACCACATACACATTTGATAACATGTATTACAAAAACCTTGTTAAGAACTTAGGGTTACTACCAACTGATGAGGCTCTTATGAGTGATAGCACAACTGCTTCGTTGGTGAACAAGTATAGCCAGTGGCCAAGTGGTATGGTTTACTTTTACAAGGACTTTGATGTGTCTCTAGAGAAAATGGGCCTTATAGGTGTACTTACAGGACCACAAGGGGACATAAGGAAAAACTGCAGGGTGATCAACTAG

Predicted protein sequences of Glyma17g20450

Limit To All Plant Sequences

>Glyma17g20450.1   sequence type=predicted peptide   gene model=Glyma17g20450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MECTSNNKHSFVLLILLVLLSPLVLCQLRYDYYFATCPTLTFIVRNSLVLAMADEQRIAASILRLHFHDCFANGCDASVLLDDTSSFKGEKSALPNLNSLKGFELIDTIKSQIEWICPSTVSCADILALAAREAVNLSIGTYYWRPALLGRRDGTTASESEASWLPSPSDTLQNITNKFLSKGLDIKDLVVLSGAHTIGYARCFTLKQRFFNYKDTGKPDPSLDASLLQHLQKLCPDNSSDTNLAPLDPVTTYTFDNMYYKNLVKNLGLLPTDEALMSDSTTASLVNKYSQWPSGMVYFYKDFDVSLEKMGLIGVLTGPQGDIRKNCRVIN*

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