SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma17g20430

Feature Type:gene_model
Chromosome:Gm17
Start:19440290
stop:19445606
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g20430
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G15790AT Annotation by Michelle Graham. TAIR10: peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase | chr2:6878144-6880743 REVERSE LENGTH=361 SoyBaseE_val: 0ISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0010050GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative phase change SoyBaseN/AISS
GO:0010582GO-bp Annotation by Michelle Graham. GO Biological Process: floral meristem determinacy SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0003755GO-mf Annotation by Michelle Graham. GO Molecular Function: peptidyl-prolyl cis-trans isomerase activity SoyBaseN/AISS
KOG0546 KOG HSP90 co-chaperone CPR7/Cyclophilin JGI ISS
PTHR11071Panther CYCLOPHILIN JGI ISS
PTHR11071:SF98Panther JGI ISS
PF00160PFAM Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JGI ISS
PF00515PFAM Tetratricopeptide repeat JGI ISS
UniRef100_G7LGD2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Peptidyl-prolyl cis-trans isomerase B n=1 Tax=Medicago truncatula RepID=G7LGD2_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000189D7CCUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000189D7CC related cluster n=1 Tax=unknown RepID=UPI000189D7CC SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g20430
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g20430 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g177600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g20430
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g20430
>Glyma17g20430.1   sequence type=CDS   gene model=Glyma17g20430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAACCCTAGATGCTTCCTCGACATCACCATCGGCGGCGAGTTAGAAGGCAGGATCGTCGTCGAGCTCTTCCACGACGTTGTTCCCAAAACCGCCGAGAATTTCCGCGCCCTCTGCACCGGCGAAAAGGGCATCGGCCCCAACACCGGCGTCCCCCTCCACTACAAGGGCATGTGTTTCCACCGCGTGATCAAAGGGTTCATGATCCAGGGCGGCGACATCTCCGCTGGGGATGGCACCGGTGGGGAATCAATCTATGGCGCCAAGTTCGAGGACGAGAACTTGGAGATGAAGCACGAGAGGAAGGGGACGCTTTCCATGGCCAATGCGGGACCCAACACCAACGGCTCCCAGTTCTTCATCACCACCACGCGCACTCCTCACTTGGACGGAAAGCACGTCGTGTTTGGGAAAGTTCTGAAAGGAATGGGCATTGTTCGATCTGTGGAACACGTTGTTACTGGGGAGAATGACCGTCCCACTCAGGATGTTGTGGTAGTTGATTGTGGGGAAATTGCTGAAGGGGAAGATGATGGAGTTGTTAACTTCTTTAAGGATGGTGACACCTATCCCGATTGGCCCGCTGATCTCGATGTCAAACCTGATGAACTTTCTTGGTGGATGAGTGCTGTGGACGCTATCAAAACCCTTGGGAATGAGCAGTACAAGAAGCTAGATTATAAGATGGCTCTCAGAAAGTATCGCAAAGCTTTGCGCTATTTGGATGTGTGTTGGGAGAAGGAGGACATTGACCAAGAGAATAGCGCTGCTTTGAGAAAGACAAAATCTCAAATCTTTACAAACAGTTCTGCTTGTAAATTGAAATTAGGTGATCTACAAGGAGCGTTACTGGATTCAGACTTTGCGATGCATGACGGAGATAATGCGAAAGCTCTGTTTCGCAAAGGCCAGGCATATATGTTACTCAACGACCTAGATGCTGCTGTTGAAAGTTTCAAGAAAGCATTAGAGTTGGAGCCGAATGATGGAGGGATTAAAAAAGAGTATGCCACTGCCAGGAGGAGGGTTGCTGATAGACGTGATCAAGAGAAAAAAGCTTATTCTAGAATGTTCAAATAG
Predicted protein sequences of Glyma17g20430
>Glyma17g20430.1   sequence type=predicted peptide   gene model=Glyma17g20430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVNPRCFLDITIGGELEGRIVVELFHDVVPKTAENFRALCTGEKGIGPNTGVPLHYKGMCFHRVIKGFMIQGGDISAGDGTGGESIYGAKFEDENLEMKHERKGTLSMANAGPNTNGSQFFITTTRTPHLDGKHVVFGKVLKGMGIVRSVEHVVTGENDRPTQDVVVVDCGEIAEGEDDGVVNFFKDGDTYPDWPADLDVKPDELSWWMSAVDAIKTLGNEQYKKLDYKMALRKYRKALRYLDVCWEKEDIDQENSAALRKTKSQIFTNSSACKLKLGDLQGALLDSDFAMHDGDNAKALFRKGQAYMLLNDLDAAVESFKKALELEPNDGGIKKEYATARRRVADRRDQEKKAYSRMFK*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo