Glyma17g20290 - SoyBase

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Report for Sequence Feature Glyma17g20290

Feature Type:	gene_model
Chromosome:	Gm17
Start:	18900234
stop:	18903914
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g20290

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G50560	AT	Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein \| chr3:18761247-18763835 REVERSE LENGTH=272	SoyBase	E_val: 1.00E-119	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
KOG1014	KOG	17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3	JGI		ISS
KOG1199	KOG	Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase	JGI		ISS
PTHR24316	Panther	FAMILY NOT NAMED	JGI		ISS
PF00106	PFAM	short chain dehydrogenase	JGI		ISS
UniRef100_B9S8J4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Short-chain dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9S8J4_RICCO	SoyBase	E_val: 2.00E-150	ISS
UniRef100_UPI000233F0A0	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F0A0 related cluster n=1 Tax=unknown RepID=UPI000233F0A0	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g20290

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g20290 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g176200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g20290

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g20290

Limit To All Plant Sequences

>Glyma17g20290.2   sequence type=transcript   gene model=Glyma17g20290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTTCTTTCTTATTGTAGAATTTTTTTGCAACTATATAATATTTTAGGTTAGGAATGAAGTCAGTGTACAATTATGTCACGTTGAGAGGAAGTACAGAAAGGAGAGGCTGCTGGAGCCGAACTGGAGGGAAAACGAATGCTTCTTGTAAGGGAGGCAATGATTCAGACATACCAAAGACATCTCACCCCCTTCCTCCAAAACGCCAATCTTCTCCTCTCCACATCTTAAATATCCCCCTCTTTCTAAATTCCACCAACCACTTTCTTGCTTTCACTTCCAATTCTCAATTCCTCTTTATTTGATTCTGGGTTCTTTTTTTGTTTTTTGCCATACACATAATTGTCTAAAGGGAGAAAGAAAAAGAGAGATGCGAAGCATGGCAAGCTCCGCTTCCTCGCGAGGCATTGCAGCTATCGTCGGTGTGGGCCCCAACCTCGGCCTCTCCATCGCTCGCAAGTTCGCTCACGAGGGCTACACGGTTGCCATCCTCGCTCGTGACTTGGGGAGGTTGTCAAGATTTGCTGATGAAATAGCGAGGGAAGAGAAGGCGCAGGTTTTTGCTATAAGAATAGACTGTTCCGATTCAAGAAGCGTGAGAGAGGCATTTGAAGGAGTGCTCTCTCTGGGATTCGTGGAAATTCTTGTCTACAATGCTTACCAGCCACTACCTTGGTGCCCTTCCTCCTTCCAAGATCTTCGCATCGAATCCTTTGAAAGATCCCTTGCCGTTTCTTCCGTCGGCGCCTTCCACTGCGCTCAACAGGTGCTGCCGGGTATGGTTGAAAGAGGAAAAGGAACGATTCTCTTCACTGGCTGCTCCGCTTCTCTAAACGGCATTGCTGGATACTCTGAACTATGCTGTGGGAAATTCGCTTTGAGAGCACTATCGCAATGTTTGGCCAAGGAATTTCAACCTCAAGGAGTGCACCTAGCTCATGTTATCATTGACGGTGTTATTGGCCCACCCAGGTTGAGGCATTGATGATGGATGGAATTTGCATGTTGTGGGGGCACACAGAGGACCAACCTTGACGTCATCATCTTCACAGAGGGGAAATTCATTGGGGGAGCAAAGCAGTGGAGGAGGAGGCGAGGGTACAATGGACCCAGACGCACTCGCTCAAACCTTCTGGCACTTGCACGTTCAGGACCGGAACGCTTGGACCCTGGAGATGGATCTTCGTTCACCCTCTGCTAGATTCTTCTAGCTACTAAGTTAACCCCCAATTAAAAATGTGCCTAGCTCAATTATTATATTTATTTTTCGCTCTATAGTCTATATAGTCTTCAGTGTCAAATCTCAATCACTTCATCCATGACCTCATGGCATCAACCGTGAATTCAATGATGTTTACAATCAACACTGTTGGGCTTGCCGGTGTGCTGAATTGCTTGTGTCTCGGGATATTAATCTTTGATCGACCCAAAAATATTTTATTCACCCAAAAAGAAATTATGTGTATGTACAAAGATATTATACGGTGTGTTGTTACTTGTTAGTTTGGGTCAATCAAGTAGTAATTTTATTACTGTTTTTGTAGAGACAAAATTAAGAAAAGGATGTGTATATTAGTATATCATATATATCATCCGTTTGTGTGTTAATTTGGATTTGGATTATTCTCTCTTGTCAAAATATATTTGACATTTACAAAATCGTGATTAATGAGTGATTTTGTCGGTAATGGGTCGAGTTGTATATGTTTTGGAGGAAGTGAGGGGTTGTGGGCCCCATTTGAGCAAAAGTTAAGGGGAACGAAGGAGTGAGATGGGGACATGGTTGCATGGACAATAGTAGGAATTCGTGTTCTAATTTTGGACACACAAAAAACTGTGTGTACGTACACATGCTTGAATCCTCGAAAGTTTGAGTCTTGTTATTTTCATGCTAT

>Glyma17g20290.3   sequence type=transcript   gene model=Glyma17g20290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTTCTTTCTTATTGTAGAATTTTTTTGCAACTATATAATATTTTAGGTTAGGAATGAAGTCAGTGTACAATTATGTCACGTTGAGAGGAAGTACAGAAAGGAGAGGCTGCTGGAGCCGAACTGGAGGGAAAACGAATGCTTCTTGTAAGGGAGGCAATGATTCAGACATACCAAAGACATCTCACCCCCTTCCTCCAAAACGCCAATCTTCTCCTCTCCACATCTTAAATATCCCCCTCTTTCTAAATTCCACCAACCACTTTCTTGCTTTCACTTCCAATTCTCAATTCCTCTTTATTTGATTCTGGGTTCTTTTTTTGTTTTTTGCCATACACATAATTGTCTAAAGGGAGAAAGAAAAAGAGAGATGCGAAGCATGGCAAGCTCCGCTTCCTCGCGAGGCATTGCAGCTATCGTCGGTGTGGGCCCCAACCTCGGCCTCTCCATCGCTCGCAAGTTCGCTCACGAGGGCTACACGGTTGCCATCCTCGCTCGTGACTTGGGGAGGTTGTCAAGATTTGCTGATGAAATAGCGAGGGAAGAGAAGGCGCAGGTTTTTGCTATAAGAATAGACTGTTCCGATTCAAGAAGCGTGAGAGAGGCATTTGAAGGAGTGCTCTCTCTGGGATTCGTGGAAATTCTTGTCTACAATGCTTACCAGCCACTACCTTGGTGCCCTTCCTCCTTCCAAGATCTTCGCATCGAATCCTTTGAAAGATCCCTTGCCGTTTCTTCCGTCGGCGCCTTCCACTGCGCTCAACAGGTGCTGCCGGGTATGGTTGAAAGAGGAAAAGGAACGATTCTCTTCACTGGCTGCTCCGCTTCTCTAAACGGCATTGCTGGATACTCTGAACTATAACACTGCACCCAATGGGGGAGATGAGACAGGCTGTGGGAAATTCGCTTTGAGAGCACTATCGCAATGTTTGGCCAAGGAATTTCAACCTCAAGGAGTGCACCTAGCTCATGTTATCATTGACGGTGTTATTGGCCCACCCAGAGGACCAACCTTGACGTCATCATCTTCACAGAGGGGAAATTCATTGGGGGAGCAAAGCAGTGGAGGAGGAGGCGAGGGTACAATGGACCCAGACGCACTCGCTCAAACCTTCTGGCACTTGCACGTTCAGGACCGGAACGCTTGGACCCTGGAGATGGATCTTCGTTCACCCTCTGCTAGATTCTTCTAGCTACTAAGTTAACCCCCAATTAAAAATGTGCCTAGCTCAATTATTATATTTATTTTTCGCTCTATAGTCTATATAGTCTTCAGTGTCAAATCTCAATCACTTCATCCATGACCTCATGGCATCAACCGTGAATTCAATGATGTTTACAATCAACACTGTTGGGCTTGCCGGTGTGCTGAATTGCTTGTGTCTCGGGATATTAATCTTTGATCGACCCAAAAATATTTTATTCACCCAAAAAGAAATTATGTGTATGTACAAAGATATTATACGGTGTGTTGTTACTTGTTAGTTTGGGTCAATCAAGTAGTAATTTTATTACTGTTTTTGTAGAGACAAAATTAAGAAAAGGATGTGTATATTAGTATATCATATATATCATCCGTTTGTGTGTTAATTTGGATTTGGATTATTCTCTCTTGTCAAAATATATTTGACATTTACAAAATCGTGATTAATGAGTGATTTTGTCGGTAATGGGTCGAGTTGTATATGTTTTGGAGGAAGTGAGGGGTTGTGGGCCCCATTTGAGCAAAAGTTAAGGGGAACGAAGGAGTGAGATGGGGACATGGTTGCATGGACAATAGTAGGAATTCGTGTTCTAATTTTGGACACACAAAAAACTGTGTGTACGTACACATGCTTGAATCCTCGAAAGTTTGAGTCTTGTTATTTTCATGCTAT

>Glyma17g20290.4   sequence type=transcript   gene model=Glyma17g20290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTTCTTTCTTATTGTAGAATTTTTTTGCAACTATATAATATTTTAGGTTAGGAATGAAGTCAGTGTACAATTATGTCACGTTGAGAGGAAGTACAGAAAGGAGAGGCTGCTGGAGCCGAACTGGAGGGAAAACGAATGCTTCTTGTAAGGGAGGCAATGATTCAGACATACCAAAGACATCTCACCCCCTTCCTCCAAAACGCCAATCTTCTCCTCTCCACATCTTAAATATCCCCCTCTTTCTAAATTCCACCAACCACTTTCTTGCTTTCACTTCCAATTCTCAATTCCTCTTTATTTGATTCTGGGTTCTTTTTTTGTTTTTTGCCATACACATAATTGTCTAAAGGGAGAAAGAAAAAGAGAGATGCGAAGCATGGCAAGCTCCGCTTCCTCGCGAGGCATTGCAGCTATCGTCGGTGTGGGCCCCAACCTCGGCCTCTCCATCGCTCGCAAGTTCGCTCACGAGGGCTACACGGTTGCCATCCTCGCTCGTGACTTGGGGAGGTTGTCAAGATTTGCTGATGAAATAGCGAGGGAAGAGAAGGCGCAGGTTTTTGCTATAAGAATAGACTGTTCCGATTCAAGAAGCGTGAGAGAGGCATTTGAAGGAGTGCTCTCTCTGGGATTCGTGGAAATTCTTGTCTACAATGCTTACCAGCCACTACCTTGGTGCCCTTCCTCCTTCCAAGATCTTCGCATCGAATCCTTTGAAAGATCCCTTGCCGTTTCTTCCGTCGGCGCCTTCCACTGCGCTCAACAGGTGCTGCCGGGTATGGTTGAAAGAGGAAAAGGAACGATTCTCTTCACTGGCTGCTCCGCTTCTCTAAACGGCATTGCTGGATACTCTGAACTATAACACTGCACCCAATGGGGGAGATGAGACAGGCTGTGGGAAATTCGCTTTGAGAGCACTATCGCAATGTTTGGCCAAGGAATTTCAACCTCAAGGAGTGCACCTAGCTCATGTTATCATTGACGGTGTTATTGGCCCACCCAGGTTGAGGCATTGATGATGGATGGAATTTGCATGTTGTGGGGGCACACAGAGGACCAACCTTGACGTCATCATCTTCACAGAGGGGAAATTCATTGGGGGAGCAAAGCAGTGGAGGAGGAGGCGAGGGTACAATGGACCCAGACGCACTCGCTCAAACCTTCTGGCACTTGCACGTTCAGGACCGGAACGCTTGGACCCTGGAGATGGATCTTCGTTCACCCTCTGCTAGATTCTTCTAGCTACTAAGTTAACCCCCAATTAAAAATGTGCCTAGCTCAATTATTATATTTATTTTTCGCTCTATAGTCTATATAGTCTTCAGTGTCAAATCTCAATCACTTCATCCATGACCTCATGGCATCAACCGTGAATTCAATGATGTTTACAATCAACACTGTTGGGCTTGCCGGTGTGCTGAATTGCTTGTGTCTCGGGATATTAATCTTTGATCGACCCAAAAATATTTTATTCACCCAAAAAGAAATTATGTGTATGTACAAAGATATTATACGGTGTGTTGTTACTTGTTAGTTTGGGTCAATCAAGTAGTAATTTTATTACTGTTTTTGTAGAGACAAAATTAAGAAAAGGATGTGTATATTAGTATATCATATATATCATCCGTTTGTGTGTTAATTTGGATTTGGATTATTCTCTCTTGTCAAAATATATTTGACATTTACAAAATCGTGATTAATGAGTGATTTTGTCGGTAATGGGTCGAGTTGTATATGTTTTGGAGGAAGTGAGGGGTTGTGGGCCCCATTTGAGCAAAAGTTAAGGGGAACGAAGGAGTGAGATGGGGACATGGTTGCATGGACAATAGTAGGAATTCGTGTTCTAATTTTGGACACACAAAAAACTGTGTGTACGTACACATGCTTGAATCCTCGAAAGTTTGAGTCTTGTTATTTTCATGCTAT

Coding sequences of Glyma17g20290

Limit To All Plant Sequences

>Glyma17g20290.1   sequence type=CDS   gene model=Glyma17g20290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGAAGCATGGCAAGCTCCGCTTCCTCGCGAGGCATTGCAGCTATCGTCGGTGTGGGCCCCAACCTCGGCCTCTCCATCGCTCGCAAGTTCGCTCACGAGGGCTACACGGTTGCCATCCTCGCTCGTGACTTGGGGAGGTTGTCAAGATTTGCTGATGAAATAGCGAGGGAAGAGAAGGCGCAGGTTTTTGCTATAAGAATAGACTGTTCCGATTCAAGAAGCGTGAGAGAGGCATTTGAAGGAGTGCTCTCTCTGGGATTCGTGGAAATTCTTGTCTACAATGCTTACCAGCCACTACCTTGGTGCCCTTCCTCCTTCCAAGATCTTCGCATCGAATCCTTTGAAAGATCCCTTGCCGTTTCTTCCGTCGGCGCCTTCCACTGCGCTCAACAGGTGCTGCCGGGTATGGTTGAAAGAGGAAAAGGAACGATTCTCTTCACTGGCTGCTCCGCTTCTCTAAACGGCATTGCTGGATACTCTGAACTATGCTGTGGGAAATTCGCTTTGAGAGCACTATCGCAATGTTTGGCCAAGGAATTTCAACCTCAAGGAGTGCACCTAGCTCATGTTATCATTGACGGTGTTATTGGCCCACCCAGAGGACCAACCTTGACGTCATCATCTTCACAGAGGGGAAATTCATTGGGGGAGCAAAGCAGTGGAGGAGGAGGCGAGGGTACAATGGACCCAGACGCACTCGCTCAAACCTTCTGGCACTTGCACGTTCAGGACCGGAACGCTTGGACCCTGGAGATGGATCTTCGTTCACCCTCTGCTAGATTCTTCTAG

>Glyma17g20290.2   sequence type=CDS   gene model=Glyma17g20290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGAAGCATGGCAAGCTCCGCTTCCTCGCGAGGCATTGCAGCTATCGTCGGTGTGGGCCCCAACCTCGGCCTCTCCATCGCTCGCAAGTTCGCTCACGAGGGCTACACGGTTGCCATCCTCGCTCGTGACTTGGGGAGGTTGTCAAGATTTGCTGATGAAATAGCGAGGGAAGAGAAGGCGCAGGTTTTTGCTATAAGAATAGACTGTTCCGATTCAAGAAGCGTGAGAGAGGCATTTGAAGGAGTGCTCTCTCTGGGATTCGTGGAAATTCTTGTCTACAATGCTTACCAGCCACTACCTTGGTGCCCTTCCTCCTTCCAAGATCTTCGCATCGAATCCTTTGAAAGATCCCTTGCCGTTTCTTCCGTCGGCGCCTTCCACTGCGCTCAACAGGTGCTGCCGGGTATGGTTGAAAGAGGAAAAGGAACGATTCTCTTCACTGGCTGCTCCGCTTCTCTAAACGGCATTGCTGGATACTCTGAACTATGCTGTGGGAAATTCGCTTTGAGAGCACTATCGCAATGTTTGGCCAAGGAATTTCAACCTCAAGGAGTGCACCTAGCTCATGTTATCATTGACGGTGTTATTGGCCCACCCAGGTTGAGGCATTGA

>Glyma17g20290.3   sequence type=CDS   gene model=Glyma17g20290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGAAGCATGGCAAGCTCCGCTTCCTCGCGAGGCATTGCAGCTATCGTCGGTGTGGGCCCCAACCTCGGCCTCTCCATCGCTCGCAAGTTCGCTCACGAGGGCTACACGGTTGCCATCCTCGCTCGTGACTTGGGGAGGTTGTCAAGATTTGCTGATGAAATAGCGAGGGAAGAGAAGGCGCAGGTTTTTGCTATAAGAATAGACTGTTCCGATTCAAGAAGCGTGAGAGAGGCATTTGAAGGAGTGCTCTCTCTGGGATTCGTGGAAATTCTTGTCTACAATGCTTACCAGCCACTACCTTGGTGCCCTTCCTCCTTCCAAGATCTTCGCATCGAATCCTTTGAAAGATCCCTTGCCGTTTCTTCCGTCGGCGCCTTCCACTGCGCTCAACAGGTGCTGCCGGGTATGGTTGAAAGAGGAAAAGGAACGATTCTCTTCACTGGCTGCTCCGCTTCTCTAAACGGCATTGCTGGATACTCTGAACTATAA

>Glyma17g20290.4   sequence type=CDS   gene model=Glyma17g20290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGAAGCATGGCAAGCTCCGCTTCCTCGCGAGGCATTGCAGCTATCGTCGGTGTGGGCCCCAACCTCGGCCTCTCCATCGCTCGCAAGTTCGCTCACGAGGGCTACACGGTTGCCATCCTCGCTCGTGACTTGGGGAGGTTGTCAAGATTTGCTGATGAAATAGCGAGGGAAGAGAAGGCGCAGGTTTTTGCTATAAGAATAGACTGTTCCGATTCAAGAAGCGTGAGAGAGGCATTTGAAGGAGTGCTCTCTCTGGGATTCGTGGAAATTCTTGTCTACAATGCTTACCAGCCACTACCTTGGTGCCCTTCCTCCTTCCAAGATCTTCGCATCGAATCCTTTGAAAGATCCCTTGCCGTTTCTTCCGTCGGCGCCTTCCACTGCGCTCAACAGGTGCTGCCGGGTATGGTTGAAAGAGGAAAAGGAACGATTCTCTTCACTGGCTGCTCCGCTTCTCTAAACGGCATTGCTGGATACTCTGAACTATAA

Predicted protein sequences of Glyma17g20290

Limit To All Plant Sequences

>Glyma17g20290.1   sequence type=predicted peptide   gene model=Glyma17g20290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRSMASSASSRGIAAIVGVGPNLGLSIARKFAHEGYTVAILARDLGRLSRFADEIAREEKAQVFAIRIDCSDSRSVREAFEGVLSLGFVEILVYNAYQPLPWCPSSFQDLRIESFERSLAVSSVGAFHCAQQVLPGMVERGKGTILFTGCSASLNGIAGYSELCCGKFALRALSQCLAKEFQPQGVHLAHVIIDGVIGPPRGPTLTSSSSQRGNSLGEQSSGGGGEGTMDPDALAQTFWHLHVQDRNAWTLEMDLRSPSARFF*

>Glyma17g20290.2   sequence type=predicted peptide   gene model=Glyma17g20290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRSMASSASSRGIAAIVGVGPNLGLSIARKFAHEGYTVAILARDLGRLSRFADEIAREEKAQVFAIRIDCSDSRSVREAFEGVLSLGFVEILVYNAYQPLPWCPSSFQDLRIESFERSLAVSSVGAFHCAQQVLPGMVERGKGTILFTGCSASLNGIAGYSELCCGKFALRALSQCLAKEFQPQGVHLAHVIIDGVIGPPRLRH*

>Glyma17g20290.3   sequence type=predicted peptide   gene model=Glyma17g20290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRSMASSASSRGIAAIVGVGPNLGLSIARKFAHEGYTVAILARDLGRLSRFADEIAREEKAQVFAIRIDCSDSRSVREAFEGVLSLGFVEILVYNAYQPLPWCPSSFQDLRIESFERSLAVSSVGAFHCAQQVLPGMVERGKGTILFTGCSASLNGIAGYSEL*

>Glyma17g20290.4   sequence type=predicted peptide   gene model=Glyma17g20290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRSMASSASSRGIAAIVGVGPNLGLSIARKFAHEGYTVAILARDLGRLSRFADEIAREEKAQVFAIRIDCSDSRSVREAFEGVLSLGFVEILVYNAYQPLPWCPSSFQDLRIESFERSLAVSSVGAFHCAQQVLPGMVERGKGTILFTGCSASLNGIAGYSEL*

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