SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G50620 | AT | Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:18784993-18786747 REVERSE LENGTH=340 | SoyBase | E_val: 2.00E-167 | ISS |
| GO:0005575 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cellular component | SoyBase | N/A | ISS |
| GO:0008146 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sulfotransferase activity | SoyBase | N/A | ISS |
| PF00685 | PFAM | Sulfotransferase domain | JGI | ISS | |
| UniRef100_F4JKP9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: P-loop containing nucleoside triphosphate hydrolase family protein-like protein n=1 Tax=Arabidopsis thaliana RepID=F4JKP9_ARATH | SoyBase | E_val: 1.00E-151 | ISS |
| UniRef100_I1MVZ0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MVZ0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g20280 not represented in the dataset |
Glyma17g20280 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g176100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g20280.2 sequence type=transcript gene model=Glyma17g20280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGGGAAACCCATTTCTGACCCGCCCCAAAGTCATTCCTAGTGTAAATAGCAAATATGATAGTGCTAACAGAAGCTCCCTTTCTCAATTGAGACTCTCAACACAAACAAGGTCCAATCCCTCAGCCTTTCCCTACTGTTCTGCCTCACGCACTGTTTCTTTTTCTTTGCTTCGCTATTTCAAACATTCACTCCAGTTCTCTCTCTCTCTCTTGTTTGTTTCTTCTGGAACAGAATGGCGGTGGTACTTAAAGACATGTGTTTCTTCAACAACAAGGTGCTACTGTGTGGTCCTCACTTCTAATAATAAAACCACTTGTCCTTTCTGCTGTGAGCAACATAGTGCTTCTTTTTTTTGCTACCCTCCCAAGTTACCATCATTCCTCTTTCTTGTTTTTGTTTTCGTTTTTTAACCAAAAAGTTTCAAACACACTGCAAGTGGGTCTTCCCTCTTTTTTTTTTTTTTTTCTTCACACTTATTTTTGAAACTCATTGCTTCCAAACCAGAGAAGAAAAAAAAAATGAATACTTTGAGCTCCCTCTACATGTTTCGATCCAACCCATTATTCATAAATGACATTCTGGTTATAAAGCCTCAGAAGAAATCACCACTGTTGTTAAGGATGTCGGTGTTGATCTTCTCAATGGTGTGTGGTGTTTTCATTTGTTCCGTGTGTCTAAAGCAGATAAGCACTCATGCAAGGACTATGCTTATGGAGTTGCAAATTGAGAAGCCTTCTCGGAGTAGTAGTAGTAGATTGAACCTAAAAAATGATGTTCCTTTGTTACATTACCCCAAGCCTGTGTCTTTCAACAGGAGTGAGTGTGCTGGTAACCCTGTGCGGTTCTTTGCCATTTTGTCGAATCAGAGATCTGGCAGTGGGTGGTTTGAGACCCTTTTGAATAGCCATATTAATGTGAGCTCCAATGGGGAGATTTTTTCAGTTAGAGAAAGAAGAGTAAATGTTTCTACCATTGTACAGACTTTGGACAAAGTTTACAACCTGGACTGGCTCAGCAGTGCTTCCAAGAATGAATGCTCAGCTGCAATTGGATTTAAGTGGATGCTTAATCAGGGGCTAATGGAGCACCCTAAGGAAATAGCAGATTACTTCAACAGTAGAAGTGTTTCTGTCATATTTCTTTTCCGAAGAAACTTATTACGGAGAATGGTATCAATGCTTGCCAACTCTTATGATCGTTATGCTAAGCTATTGAGTGGAACTCATAAGTCTCATGTTCATTCTACAGAAGAGGCTGATACTCTTTCAAAGTACAAGCCTACCATTAATTCTACATCATTGCTGGCTGATTTGAAGGATATAGAAATGAGAACTGCAAAGGTGTTGGAATACTTCAACACCACTCGGCATATGATCCTGTACTATGAGGATCTTATGCGAAATTGTACTAAGCTAAAAGATGTGCAAGAGTTTTTAGGATTGCCACAGATGGAATTAACAAGCCGTCAGGTTAAGATACACAGAGGACCATTGTCAGATCACATTAAAAATTGGGATGATGTGAACAGGACACTAACAGGAACTGTTTATGAGAGTTTCCTCCACGCCGATTATTCATCTTAACCTCTAACTCCTGGAAAGGTGTAAATATCAACACTGATTTTGTCCCGGGAAATAGTTTGAAGTTTTGGTGCTGGTTGCGGTAAGAACACTGTCTCTGCATTCCGATATTTCTTTTCACTCCATTGATGAGATGTATGTTTCTTTGTAATCTTTTTATTTTTGTGCATTCTTGAATGACTTTGTATATTCCCAGCTAATTTATTAGTAAAGATGAGCATTGGTTTTATTCAAACGAGTTTTCTATGTTCTAT
>Glyma17g20280.1 sequence type=CDS gene model=Glyma17g20280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGTGGTACTTAAAGACATGTGTTTCTTCAACAACAAGGACATTCTGGTTATAAAGCCTCAGAAGAAATCACCACTGTTGTTAAGGATGTCGGTGTTGATCTTCTCAATGGTGTGTGGTGTTTTCATTTGTTCCGTGTGTCTAAAGCAGATAAGCACTCATGCAAGGACTATGCTTATGGAGTTGCAAATTGAGAAGCCTTCTCGGAGTAGTAGTAGTAGATTGAACCTAAAAAATGATGTTCCTTTGTTACATTACCCCAAGCCTGTGTCTTTCAACAGGAGTGAGTGTGCTGGTAACCCTGTGCGGTTCTTTGCCATTTTGTCGAATCAGAGATCTGGCAGTGGGTGGTTTGAGACCCTTTTGAATAGCCATATTAATGTGAGCTCCAATGGGGAGATTTTTTCAGTTAGAGAAAGAAGAGTAAATGTTTCTACCATTGTACAGACTTTGGACAAAGTTTACAACCTGGACTGGCTCAGCAGTGCTTCCAAGAATGAATGCTCAGCTGCAATTGGATTTAAGTGGATGCTTAATCAGGGGCTAATGGAGCACCCTAAGGAAATAGCAGATTACTTCAACAGTAGAAGTGTTTCTGTCATATTTCTTTTCCGAAGAAACTTATTACGGAGAATGGTATCAATGCTTGCCAACTCTTATGATCGTTATGCTAAGCTATTGAGTGGAACTCATAAGTCTCATGTTCATTCTACAGAAGAGGCTGATACTCTTTCAAAGTACAAGCCTACCATTAATTCTACATCATTGCTGGCTGATTTGAAGGATATAGAAATGAGAACTGCAAAGGTGTTGGAATACTTCAACACCACTCGGCATATGATCCTGTACTATGAGGATCTTATGCGAAATTGTACTAAGCTAAAAGATGTGCAAGAGTTTTTAGGATTGCCACAGATGGAATTAACAAGCCGTCAGGTTAAGATACACAGAGGACCATTGTCAGATCACATTAAAAATTGGGATGATGTGAACAGGACACTAACAGGAACTGTTTATGAGAGTTTCCTCCACGCCGATTATTCATCTTAA >Glyma17g20280.2 sequence type=CDS gene model=Glyma17g20280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATACTTTGAGCTCCCTCTACATGTTTCGATCCAACCCATTATTCATAAATGACATTCTGGTTATAAAGCCTCAGAAGAAATCACCACTGTTGTTAAGGATGTCGGTGTTGATCTTCTCAATGGTGTGTGGTGTTTTCATTTGTTCCGTGTGTCTAAAGCAGATAAGCACTCATGCAAGGACTATGCTTATGGAGTTGCAAATTGAGAAGCCTTCTCGGAGTAGTAGTAGTAGATTGAACCTAAAAAATGATGTTCCTTTGTTACATTACCCCAAGCCTGTGTCTTTCAACAGGAGTGAGTGTGCTGGTAACCCTGTGCGGTTCTTTGCCATTTTGTCGAATCAGAGATCTGGCAGTGGGTGGTTTGAGACCCTTTTGAATAGCCATATTAATGTGAGCTCCAATGGGGAGATTTTTTCAGTTAGAGAAAGAAGAGTAAATGTTTCTACCATTGTACAGACTTTGGACAAAGTTTACAACCTGGACTGGCTCAGCAGTGCTTCCAAGAATGAATGCTCAGCTGCAATTGGATTTAAGTGGATGCTTAATCAGGGGCTAATGGAGCACCCTAAGGAAATAGCAGATTACTTCAACAGTAGAAGTGTTTCTGTCATATTTCTTTTCCGAAGAAACTTATTACGGAGAATGGTATCAATGCTTGCCAACTCTTATGATCGTTATGCTAAGCTATTGAGTGGAACTCATAAGTCTCATGTTCATTCTACAGAAGAGGCTGATACTCTTTCAAAGTACAAGCCTACCATTAATTCTACATCATTGCTGGCTGATTTGAAGGATATAGAAATGAGAACTGCAAAGGTGTTGGAATACTTCAACACCACTCGGCATATGATCCTGTACTATGAGGATCTTATGCGAAATTGTACTAAGCTAAAAGATGTGCAAGAGTTTTTAGGATTGCCACAGATGGAATTAACAAGCCGTCAGGTTAAGATACACAGAGGACCATTGTCAGATCACATTAAAAATTGGGATGATGTGAACAGGACACTAACAGGAACTGTTTATGAGAGTTTCCTCCACGCCGATTATTCATCTTAA
>Glyma17g20280.1 sequence type=predicted peptide gene model=Glyma17g20280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAVVLKDMCFFNNKDILVIKPQKKSPLLLRMSVLIFSMVCGVFICSVCLKQISTHARTMLMELQIEKPSRSSSSRLNLKNDVPLLHYPKPVSFNRSECAGNPVRFFAILSNQRSGSGWFETLLNSHINVSSNGEIFSVRERRVNVSTIVQTLDKVYNLDWLSSASKNECSAAIGFKWMLNQGLMEHPKEIADYFNSRSVSVIFLFRRNLLRRMVSMLANSYDRYAKLLSGTHKSHVHSTEEADTLSKYKPTINSTSLLADLKDIEMRTAKVLEYFNTTRHMILYYEDLMRNCTKLKDVQEFLGLPQMELTSRQVKIHRGPLSDHIKNWDDVNRTLTGTVYESFLHADYSS* >Glyma17g20280.2 sequence type=predicted peptide gene model=Glyma17g20280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNTLSSLYMFRSNPLFINDILVIKPQKKSPLLLRMSVLIFSMVCGVFICSVCLKQISTHARTMLMELQIEKPSRSSSSRLNLKNDVPLLHYPKPVSFNRSECAGNPVRFFAILSNQRSGSGWFETLLNSHINVSSNGEIFSVRERRVNVSTIVQTLDKVYNLDWLSSASKNECSAAIGFKWMLNQGLMEHPKEIADYFNSRSVSVIFLFRRNLLRRMVSMLANSYDRYAKLLSGTHKSHVHSTEEADTLSKYKPTINSTSLLADLKDIEMRTAKVLEYFNTTRHMILYYEDLMRNCTKLKDVQEFLGLPQMELTSRQVKIHRGPLSDHIKNWDDVNRTLTGTVYESFLHADYSS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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