Glyma17g20280 - SoyBase

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Report for Sequence Feature Glyma17g20280

Feature Type:	gene_model
Chromosome:	Gm17
Start:	18865146
stop:	18869025
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g20280

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G50620	AT	Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr3:18784993-18786747 REVERSE LENGTH=340	SoyBase	E_val: 2.00E-167	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0008146	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sulfotransferase activity	SoyBase	N/A	ISS
PF00685	PFAM	Sulfotransferase domain	JGI		ISS
UniRef100_F4JKP9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: P-loop containing nucleoside triphosphate hydrolase family protein-like protein n=1 Tax=Arabidopsis thaliana RepID=F4JKP9_ARATH	SoyBase	E_val: 1.00E-151	ISS
UniRef100_I1MVZ0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MVZ0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g20280

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g20280 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g176100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g20280

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g20280

Limit To All Plant Sequences

>Glyma17g20280.2   sequence type=transcript   gene model=Glyma17g20280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGGAAACCCATTTCTGACCCGCCCCAAAGTCATTCCTAGTGTAAATAGCAAATATGATAGTGCTAACAGAAGCTCCCTTTCTCAATTGAGACTCTCAACACAAACAAGGTCCAATCCCTCAGCCTTTCCCTACTGTTCTGCCTCACGCACTGTTTCTTTTTCTTTGCTTCGCTATTTCAAACATTCACTCCAGTTCTCTCTCTCTCTCTTGTTTGTTTCTTCTGGAACAGAATGGCGGTGGTACTTAAAGACATGTGTTTCTTCAACAACAAGGTGCTACTGTGTGGTCCTCACTTCTAATAATAAAACCACTTGTCCTTTCTGCTGTGAGCAACATAGTGCTTCTTTTTTTTGCTACCCTCCCAAGTTACCATCATTCCTCTTTCTTGTTTTTGTTTTCGTTTTTTAACCAAAAAGTTTCAAACACACTGCAAGTGGGTCTTCCCTCTTTTTTTTTTTTTTTTCTTCACACTTATTTTTGAAACTCATTGCTTCCAAACCAGAGAAGAAAAAAAAAATGAATACTTTGAGCTCCCTCTACATGTTTCGATCCAACCCATTATTCATAAATGACATTCTGGTTATAAAGCCTCAGAAGAAATCACCACTGTTGTTAAGGATGTCGGTGTTGATCTTCTCAATGGTGTGTGGTGTTTTCATTTGTTCCGTGTGTCTAAAGCAGATAAGCACTCATGCAAGGACTATGCTTATGGAGTTGCAAATTGAGAAGCCTTCTCGGAGTAGTAGTAGTAGATTGAACCTAAAAAATGATGTTCCTTTGTTACATTACCCCAAGCCTGTGTCTTTCAACAGGAGTGAGTGTGCTGGTAACCCTGTGCGGTTCTTTGCCATTTTGTCGAATCAGAGATCTGGCAGTGGGTGGTTTGAGACCCTTTTGAATAGCCATATTAATGTGAGCTCCAATGGGGAGATTTTTTCAGTTAGAGAAAGAAGAGTAAATGTTTCTACCATTGTACAGACTTTGGACAAAGTTTACAACCTGGACTGGCTCAGCAGTGCTTCCAAGAATGAATGCTCAGCTGCAATTGGATTTAAGTGGATGCTTAATCAGGGGCTAATGGAGCACCCTAAGGAAATAGCAGATTACTTCAACAGTAGAAGTGTTTCTGTCATATTTCTTTTCCGAAGAAACTTATTACGGAGAATGGTATCAATGCTTGCCAACTCTTATGATCGTTATGCTAAGCTATTGAGTGGAACTCATAAGTCTCATGTTCATTCTACAGAAGAGGCTGATACTCTTTCAAAGTACAAGCCTACCATTAATTCTACATCATTGCTGGCTGATTTGAAGGATATAGAAATGAGAACTGCAAAGGTGTTGGAATACTTCAACACCACTCGGCATATGATCCTGTACTATGAGGATCTTATGCGAAATTGTACTAAGCTAAAAGATGTGCAAGAGTTTTTAGGATTGCCACAGATGGAATTAACAAGCCGTCAGGTTAAGATACACAGAGGACCATTGTCAGATCACATTAAAAATTGGGATGATGTGAACAGGACACTAACAGGAACTGTTTATGAGAGTTTCCTCCACGCCGATTATTCATCTTAACCTCTAACTCCTGGAAAGGTGTAAATATCAACACTGATTTTGTCCCGGGAAATAGTTTGAAGTTTTGGTGCTGGTTGCGGTAAGAACACTGTCTCTGCATTCCGATATTTCTTTTCACTCCATTGATGAGATGTATGTTTCTTTGTAATCTTTTTATTTTTGTGCATTCTTGAATGACTTTGTATATTCCCAGCTAATTTATTAGTAAAGATGAGCATTGGTTTTATTCAAACGAGTTTTCTATGTTCTAT

Coding sequences of Glyma17g20280

Limit To All Plant Sequences

>Glyma17g20280.1   sequence type=CDS   gene model=Glyma17g20280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGTGGTACTTAAAGACATGTGTTTCTTCAACAACAAGGACATTCTGGTTATAAAGCCTCAGAAGAAATCACCACTGTTGTTAAGGATGTCGGTGTTGATCTTCTCAATGGTGTGTGGTGTTTTCATTTGTTCCGTGTGTCTAAAGCAGATAAGCACTCATGCAAGGACTATGCTTATGGAGTTGCAAATTGAGAAGCCTTCTCGGAGTAGTAGTAGTAGATTGAACCTAAAAAATGATGTTCCTTTGTTACATTACCCCAAGCCTGTGTCTTTCAACAGGAGTGAGTGTGCTGGTAACCCTGTGCGGTTCTTTGCCATTTTGTCGAATCAGAGATCTGGCAGTGGGTGGTTTGAGACCCTTTTGAATAGCCATATTAATGTGAGCTCCAATGGGGAGATTTTTTCAGTTAGAGAAAGAAGAGTAAATGTTTCTACCATTGTACAGACTTTGGACAAAGTTTACAACCTGGACTGGCTCAGCAGTGCTTCCAAGAATGAATGCTCAGCTGCAATTGGATTTAAGTGGATGCTTAATCAGGGGCTAATGGAGCACCCTAAGGAAATAGCAGATTACTTCAACAGTAGAAGTGTTTCTGTCATATTTCTTTTCCGAAGAAACTTATTACGGAGAATGGTATCAATGCTTGCCAACTCTTATGATCGTTATGCTAAGCTATTGAGTGGAACTCATAAGTCTCATGTTCATTCTACAGAAGAGGCTGATACTCTTTCAAAGTACAAGCCTACCATTAATTCTACATCATTGCTGGCTGATTTGAAGGATATAGAAATGAGAACTGCAAAGGTGTTGGAATACTTCAACACCACTCGGCATATGATCCTGTACTATGAGGATCTTATGCGAAATTGTACTAAGCTAAAAGATGTGCAAGAGTTTTTAGGATTGCCACAGATGGAATTAACAAGCCGTCAGGTTAAGATACACAGAGGACCATTGTCAGATCACATTAAAAATTGGGATGATGTGAACAGGACACTAACAGGAACTGTTTATGAGAGTTTCCTCCACGCCGATTATTCATCTTAA

>Glyma17g20280.2   sequence type=CDS   gene model=Glyma17g20280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATACTTTGAGCTCCCTCTACATGTTTCGATCCAACCCATTATTCATAAATGACATTCTGGTTATAAAGCCTCAGAAGAAATCACCACTGTTGTTAAGGATGTCGGTGTTGATCTTCTCAATGGTGTGTGGTGTTTTCATTTGTTCCGTGTGTCTAAAGCAGATAAGCACTCATGCAAGGACTATGCTTATGGAGTTGCAAATTGAGAAGCCTTCTCGGAGTAGTAGTAGTAGATTGAACCTAAAAAATGATGTTCCTTTGTTACATTACCCCAAGCCTGTGTCTTTCAACAGGAGTGAGTGTGCTGGTAACCCTGTGCGGTTCTTTGCCATTTTGTCGAATCAGAGATCTGGCAGTGGGTGGTTTGAGACCCTTTTGAATAGCCATATTAATGTGAGCTCCAATGGGGAGATTTTTTCAGTTAGAGAAAGAAGAGTAAATGTTTCTACCATTGTACAGACTTTGGACAAAGTTTACAACCTGGACTGGCTCAGCAGTGCTTCCAAGAATGAATGCTCAGCTGCAATTGGATTTAAGTGGATGCTTAATCAGGGGCTAATGGAGCACCCTAAGGAAATAGCAGATTACTTCAACAGTAGAAGTGTTTCTGTCATATTTCTTTTCCGAAGAAACTTATTACGGAGAATGGTATCAATGCTTGCCAACTCTTATGATCGTTATGCTAAGCTATTGAGTGGAACTCATAAGTCTCATGTTCATTCTACAGAAGAGGCTGATACTCTTTCAAAGTACAAGCCTACCATTAATTCTACATCATTGCTGGCTGATTTGAAGGATATAGAAATGAGAACTGCAAAGGTGTTGGAATACTTCAACACCACTCGGCATATGATCCTGTACTATGAGGATCTTATGCGAAATTGTACTAAGCTAAAAGATGTGCAAGAGTTTTTAGGATTGCCACAGATGGAATTAACAAGCCGTCAGGTTAAGATACACAGAGGACCATTGTCAGATCACATTAAAAATTGGGATGATGTGAACAGGACACTAACAGGAACTGTTTATGAGAGTTTCCTCCACGCCGATTATTCATCTTAA

Predicted protein sequences of Glyma17g20280

Limit To All Plant Sequences

>Glyma17g20280.1   sequence type=predicted peptide   gene model=Glyma17g20280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVVLKDMCFFNNKDILVIKPQKKSPLLLRMSVLIFSMVCGVFICSVCLKQISTHARTMLMELQIEKPSRSSSSRLNLKNDVPLLHYPKPVSFNRSECAGNPVRFFAILSNQRSGSGWFETLLNSHINVSSNGEIFSVRERRVNVSTIVQTLDKVYNLDWLSSASKNECSAAIGFKWMLNQGLMEHPKEIADYFNSRSVSVIFLFRRNLLRRMVSMLANSYDRYAKLLSGTHKSHVHSTEEADTLSKYKPTINSTSLLADLKDIEMRTAKVLEYFNTTRHMILYYEDLMRNCTKLKDVQEFLGLPQMELTSRQVKIHRGPLSDHIKNWDDVNRTLTGTVYESFLHADYSS*

>Glyma17g20280.2   sequence type=predicted peptide   gene model=Glyma17g20280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNTLSSLYMFRSNPLFINDILVIKPQKKSPLLLRMSVLIFSMVCGVFICSVCLKQISTHARTMLMELQIEKPSRSSSSRLNLKNDVPLLHYPKPVSFNRSECAGNPVRFFAILSNQRSGSGWFETLLNSHINVSSNGEIFSVRERRVNVSTIVQTLDKVYNLDWLSSASKNECSAAIGFKWMLNQGLMEHPKEIADYFNSRSVSVIFLFRRNLLRRMVSMLANSYDRYAKLLSGTHKSHVHSTEEADTLSKYKPTINSTSLLADLKDIEMRTAKVLEYFNTTRHMILYYEDLMRNCTKLKDVQEFLGLPQMELTSRQVKIHRGPLSDHIKNWDDVNRTLTGTVYESFLHADYSS*

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