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Report for Sequence Feature Glyma17g20190

Feature Type:gene_model
Chromosome:Gm17
Start:18700075
stop:18705266
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g20190
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G37030AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12680.1); Has 101 Blast hits to 99 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:17452150-17454629 FORWARD LENGTH=569 SoyBaseE_val: 0ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_G8A334UniRef Annotation by Michelle Graham. Most informative UniRef hit: Membrane protein, putative n=1 Tax=Medicago truncatula RepID=G8A334_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1MVY6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MVY6_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g20190
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g20190 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g175600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g20190
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g20190
>Glyma17g20190.1   sequence type=CDS   gene model=Glyma17g20190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGATTTTCCTAGCTCTATGGAAGGTTGGATGAAGGCTTTGTATGTGGTCTTTGTGTTCTTCTATGCTTTCTTCCTTGGTGCTTTAAAAGGCATAGTTGTGGGTCCTATTGCTGCTCTGATTCTTATTATAGGCAACGTTGGGGTGATTCTGGGGTTGTTTCCTGCACATGTGGCTTGGACTCTTTACACCCTTTTGAAGATTCATATGTTTGATGCACCAATGAAAGCTGCTATTTTGATTGCTTTGCCTGCTTTGTTTGGCTTGTGGTTGGGTCTAGGCGTAGCTGGAAGCGTTCTTGTTGGAGTGGGGTATGGCTTTTTCACCCCTTGGGTTTCAACTTTTGAGGCCTTCAGACAAGACAATGAGTCCAAGAAATTTTCTCACTGTATTGTGGATGGAACATGGGGAACTATCAAAGGTAGTTGCACTGTGGTTAGGGATTTTGCAGATATGTGTTATCATTCATACCCAAGTTACTTAAAAGAACTGCGTGAATCACCTGCCTCAGATGAGCGTCAAAGGCTAAGGTTAATTCATGTTCCCGGATGTGTCATTGTTGGGATAATGGGGCTAGTTGTGGAGATTCCTCTTTTCACTGCAATTGCTCTAGTAAAGAGCCCCTACTTGCTTTTCAAGGGCTGGTTCAGACTTTTGCATGATTTGATTAGCAGAGAAGGTCCATTCCTTGAAATAGTTTGTATCCCCATTGCTGGTTTGACAATATTTGTGTGGCCACTAGTTGTCATTGCCAGCATTTTGTTGGCTATTTTCTCAAGCATTTTTGTTGGACTTTATGCATCTGTTATAGTATATCAGGAAAGATCTTTCCGTAGAGGTATAGCCTATGTGATTGCTATGGTTGCTGAGTTTGATGAATATACAAATGATTGGCTCTATCTTCGCGAAGGAACATTCTTGCCAAAGCCCCAATATCGAAAGAAAAAGGCTTCTCAATCATCAGAGTTTTCTGTTAGGGGAAACAGTGTGAGAGGAAACACTTCTATGGAGCCACCTGCAATGCTTATGCCATGCTTAGCTCCTTCAAGATCTGTTAAAGAGACCATTCAAGAAGTGAAAATGGTGCAAATCTGGGGAAATATGATGAGGTACTGTGAGATGAGAGGCAAGGAACTATTGGATGCTAATGTACTTACAGCTTCTGACCTCTATGAATGGATGAAGGGAAAGAATAACAATGAAGCTGCCATAGTTGGTGTTGGCTTGCCTTGTTATTCACTCCTACAAACACTTGTCTTCTCCATCAAAGCCAACTCATGTGGTGTATTGCTACTTGATGACTTTGAAATAACCTACTTAAACAGACCAAAGGATAAGTTGTTGGATTGGTTCTTCAATCCTGTGATGGTTCTCAAGGAACAGATAAGGGTTATCAAATTGGGGGAAGCTGAACTGAGATACTTGGAAAAAGTAGTTCTCTTTGGAAGCAACAAGCAACGCATGGAGGCTTGGGATAATGGTGGTTTGATGATTCATGATGCTCTTAGAGCTGCTCAAATCGAGGGAATTTCAAGAAGGATGATTGGAATGATAAGAGGTATATCAAAACTTCCAACTTATAAAAGGAAGTTTCGTCAAATTGTTAAAGCTCTAGTTACTCATTCTCTGGAGAAAGACGTTTCAGAAAGGGCTTTAGTTACTCATCATTCTGTGGATGTACTAGATGTTTCTGAAAAGGCTTTAGTTACTCGTTATCTGGAGAAAGATCCTTCTGGAAGATCAAGTAGGTCTATAGTATCAGTTGCCTCTGATGAAATTGCTTAG
Predicted protein sequences of Glyma17g20190
>Glyma17g20190.1   sequence type=predicted peptide   gene model=Glyma17g20190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMDFPSSMEGWMKALYVVFVFFYAFFLGALKGIVVGPIAALILIIGNVGVILGLFPAHVAWTLYTLLKIHMFDAPMKAAILIALPALFGLWLGLGVAGSVLVGVGYGFFTPWVSTFEAFRQDNESKKFSHCIVDGTWGTIKGSCTVVRDFADMCYHSYPSYLKELRESPASDERQRLRLIHVPGCVIVGIMGLVVEIPLFTAIALVKSPYLLFKGWFRLLHDLISREGPFLEIVCIPIAGLTIFVWPLVVIASILLAIFSSIFVGLYASVIVYQERSFRRGIAYVIAMVAEFDEYTNDWLYLREGTFLPKPQYRKKKASQSSEFSVRGNSVRGNTSMEPPAMLMPCLAPSRSVKETIQEVKMVQIWGNMMRYCEMRGKELLDANVLTASDLYEWMKGKNNNEAAIVGVGLPCYSLLQTLVFSIKANSCGVLLLDDFEITYLNRPKDKLLDWFFNPVMVLKEQIRVIKLGEAELRYLEKVVLFGSNKQRMEAWDNGGLMIHDALRAAQIEGISRRMIGMIRGISKLPTYKRKFRQIVKALVTHSLEKDVSERALVTHHSVDVLDVSEKALVTRYLEKDPSGRSSRSIVSVASDEIA*






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