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Report for Sequence Feature Glyma17g20160

Feature Type:gene_model
Chromosome:Gm17
Start:18685640
stop:18686811
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g20160
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G15680AT Annotation by Michelle Graham. TAIR10: Calcium-binding EF-hand family protein | chr2:6831024-6831587 FORWARD LENGTH=187 SoyBaseE_val: 1.00E-44ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0005509GO-mf Annotation by Michelle Graham. GO Molecular Function: calcium ion binding SoyBaseN/AISS
KOG0027 KOG Calmodulin and related proteins (EF-Hand superfamily) JGI ISS
PTHR10891Panther CALMODULIN JGI ISS
PTHR10891:SF39Panther EF-HAND CALCIUM BINDING PROTEIN JGI ISS
PF00036PFAM EF hand JGI ISS
UniRef100_G7K7Z2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Calcium-binding protein CML24 n=1 Tax=Medicago truncatula RepID=G7K7Z2_MEDTR SoyBaseE_val: 9.00E-76ISS
UniRef100_I1MVY3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MVY3_SOYBN SoyBaseE_val: 3.00E-135ISS

Expression Patterns of Glyma17g20160
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g20160 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g175400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g20160
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g20160
>Glyma17g20160.1   sequence type=CDS   gene model=Glyma17g20160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGAATTTGAGTTTCCTTCAATTTCATAGTAGCAGCCCTTTGGGGCACTCCTCTTCTCAACCCAAAAGTCCAACCCCAAACAGCAACAACTTCAAATCATCAAAACATACATCAAATGTAGGGTGCAATATTCAACCAAAATCGGAGGAAATGAAATTGGTGTTCGACAAGTTTGACACCAACAAAGATGGCAAGATTACCCTTGAAGAGTACAAAGCAGCTATGAGGACAATGGGGTGGGGAATCGAAGGCACTGAGGCTGATGAGTCTTTTCAGGTCATGGACTCTGATGGAGATGGCTTCATTGACTTCAAAGAGTTCATGGACATGTTCAACGTGGAGGAGACGGTGAAAGAGACGGAGATCAAGAGTGCTTTTCAAGTGTTTGATTTGAATGGCGACGGAAAAATCAGTGCTGAGGAATTATCACAAGTTCTCAAAAGCCTAGGGGAGAGTTGCAGCCTTAGTGCTTGCAAGAAAATGGTGATGGGGGTGGATGGAAATGGGGATGGTTTTATAGACTTGAATGAGTTTATGAGGATGCTAATGAGTGGCAAGAAACTCGCTTAA
Predicted protein sequences of Glyma17g20160
>Glyma17g20160.1   sequence type=predicted peptide   gene model=Glyma17g20160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNLSFLQFHSSSPLGHSSSQPKSPTPNSNNFKSSKHTSNVGCNIQPKSEEMKLVFDKFDTNKDGKITLEEYKAAMRTMGWGIEGTEADESFQVMDSDGDGFIDFKEFMDMFNVEETVKETEIKSAFQVFDLNGDGKISAEELSQVLKSLGESCSLSACKKMVMGVDGNGDGFIDLNEFMRMLMSGKKLA*






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