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Report for Sequence Feature Glyma17g20110

Feature Type:gene_model
Chromosome:Gm17
Start:18648874
stop:18656407
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g20110
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G58340AT Annotation by Michelle Graham. TAIR10: MATE efflux family protein | chr1:21653162-21655117 FORWARD LENGTH=532 SoyBaseE_val: 2.00E-79ISS
GO:0003156GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of organ formation SoyBaseN/AISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0006855GO-bp Annotation by Michelle Graham. GO Biological Process: drug transmembrane transport SoyBaseN/AISS
GO:0009624GO-bp Annotation by Michelle Graham. GO Biological Process: response to nematode SoyBaseN/AISS
GO:0055072GO-bp Annotation by Michelle Graham. GO Biological Process: iron ion homeostasis SoyBaseN/AISS
GO:0055085GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane transport SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0017119GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi transport complex SoyBaseN/AISS
GO:0043226GO-cc Annotation by Michelle Graham. GO Cellular Compartment: organelle SoyBaseN/AISS
GO:0005215GO-mf Annotation by Michelle Graham. GO Molecular Function: transporter activity SoyBaseN/AISS
GO:0015238GO-mf Annotation by Michelle Graham. GO Molecular Function: drug transmembrane transporter activity SoyBaseN/AISS
GO:0015297GO-mf Annotation by Michelle Graham. GO Molecular Function: antiporter activity SoyBaseN/AISS
GO:0022857GO-mf Annotation by Michelle Graham. GO Molecular Function: transmembrane transporter activity SoyBaseN/AISS
KOG1347 KOG Uncharacterized membrane protein, predicted efflux pump JGI ISS
PTHR11206Panther MULTIDRUG RESISTANCE PUMP JGI ISS
PTHR11206:SF38Panther NA+ DRIVEN MULTIDRUG EFFLUX PUMP JGI ISS
PF01554PFAM MatE JGI ISS
UniRef100_B9SC50UniRef Annotation by Michelle Graham. Most informative UniRef hit: Multidrug resistance pump, putative n=1 Tax=Ricinus communis RepID=B9SC50_RICCO SoyBaseE_val: 2.00E-118ISS
UniRef100_I1MVY2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MVY2_SOYBN SoyBaseE_val: 1.00E-125ISS

Expression Patterns of Glyma17g20110
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g20110 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g175100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g20110
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g20110
>Glyma17g20110.2   sequence type=CDS   gene model=Glyma17g20110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGCTTATCACATATGGAAAGTCAGCAATATCCACGTATTTCTTAGGCAAACTAAGCAAAGAGGCATTAGTAGGTGGAAGTCTAGCCATTGGAGTGGCCAACATAACTGGTTATTCTATCATTTCTAGCCTTGCAACAAGCATGGATGGAATATCCTCCCAGGCTTGTGGGGCCCAACAATGGACCCTTATTGGTCAAACTCTCCAATGTTCCATCATGATTTTGACCCTAACTTGCATTACCATTTCAATCTTATGGCTCAACATTGAACCCGTCCTCCTCTTTTGTGGCCAAAACCCCACCATATCATCTATCGCCACCACCTACCTTGGATTCTCTCTTCCTGACCTTATTTTCACATCCTTAATCATCTCTTTCAAGATTTTCTTGAGAACTCAAGATGTGACCCTCCCTTTCATGTTTAGTGCAACTTTGGCACCATTTTTACACGCCATCATCAATAATGTGGTCATTCACACTTTTGGCCTGGGAATTCAAGGGGTTGCCTTGGTTGGATCCTTTACCAATATAAAATTTCTTATTATCCTTTTGCTTTACCTATGGTTCTCGAGGAATTGTTCTAACTCCTGGCAAGGTTGGTGGTATGAGTTATTGGTACTCTTTTCTGGGGTCCTACCTAATGCAACTAAAACAATAGCCACCTATGGAATAATAATTCAGGCAACCTCACTTATCTATAATTTTCCTTATGCATTAAGTTTGGCTGTTTCACCAAAGGTAGGGAATGAACTTGGAGCTAATAGGTCTGACAAGGCAAAGGCATCATCATTCTATGCATTACTATGTGCTTTCATCACGACCATTGTAGCTACAATATTGACAGTAAATGGGAGTGCTAGACCTACTTTGGGTGCCAAGATAAACTTGGTCTCCTTTTATGTTGTGGGCTTACCTGTTGCTCTTTTGATGAGCTTTGTATTTGATTTGGGCTTATTGGGACTTTTATTGGGCCTGTTGTTAGCTCAAATAGTGCGTGCTAGTGTGATGACCATTGTGTTGGCAAGAACAAATTGGGGAGCAAGCACAGAGGGCAAGGGAGTTTAA
Predicted protein sequences of Glyma17g20110
>Glyma17g20110.2   sequence type=predicted peptide   gene model=Glyma17g20110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLITYGKSAISTYFLGKLSKEALVGGSLAIGVANITGYSIISSLATSMDGISSQACGAQQWTLIGQTLQCSIMILTLTCITISILWLNIEPVLLFCGQNPTISSIATTYLGFSLPDLIFTSLIISFKIFLRTQDVTLPFMFSATLAPFLHAIINNVVIHTFGLGIQGVALVGSFTNIKFLIILLLYLWFSRNCSNSWQGWWYELLVLFSGVLPNATKTIATYGIIIQATSLIYNFPYALSLAVSPKVGNELGANRSDKAKASSFYALLCAFITTIVATILTVNGSARPTLGAKINLVSFYVVGLPVALLMSFVFDLGLLGLLLGLLLAQIVRASVMTIVLARTNWGASTEGKGV*






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