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Report for Sequence Feature Glyma17g20070

Feature Type:gene_model
Chromosome:Gm17
Start:18609225
stop:18613267
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G36990AT Annotation by Michelle Graham. TAIR10: heat shock factor 4 | chr4:17440660-17441706 FORWARD LENGTH=284 SoyBaseE_val: 2.00E-79ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006984GO-bp Annotation by Michelle Graham. GO Biological Process: ER-nucleus signaling pathway SoyBaseN/AISS
GO:0009407GO-bp Annotation by Michelle Graham. GO Biological Process: toxin catabolic process SoyBaseN/AISS
GO:0009408GO-bp Annotation by Michelle Graham. GO Biological Process: response to heat SoyBaseN/AISS
GO:0009414GO-bp Annotation by Michelle Graham. GO Biological Process: response to water deprivation SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0010583GO-bp Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone SoyBaseN/AISS
GO:0030968GO-bp Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response SoyBaseN/AISS
GO:0034976GO-bp Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress SoyBaseN/AISS
GO:0042538GO-bp Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response SoyBaseN/AISS
GO:0045892GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
PTHR10015Panther HEAT SHOCK TRANSCRIPTION FACTOR JGI ISS
PTHR10015:SF7Panther HEAT SHOCK TRANSCRIPTION FACTOR JGI ISS
PF00447PFAM HSF-type DNA-binding JGI ISS
UniRef100_I1MVX9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MVX9_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q43457UniRef Annotation by Michelle Graham. Most informative UniRef hit: Heat shock transcription factor 34 n=1 Tax=Glycine max RepID=Q43457_SOYBN SoyBaseE_val: 5.00E-89ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g174900 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma17g20070.1   sequence type=CDS   gene model=Glyma17g20070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCACAGCAGCAGCGTTCGACGCCGGCGCCGTTCTTGACGAAGACGTATCTGCTGGTGGATGACCCCGCCACCGACGACGTCGTTTCGTGGAGCGAAGGTGGCAATACCTTCGTCGTTTGGAAACACGCCGATTTCGCTAAGGACTTGCTTCCGAAGTACTTCAAGCATAATAATTTCTCCAGCTTCGTTCGCCAACTCAACACCTATGGATTCCGAAAAACTGTTCCCGACAAATGGGAATTTGCCAATGAGTATTTCAAGCGAGGACAGACGGATCTTCTCGCCGAGATCAGGCGGCGGAAGGTGGTGTCTCCGGTGACCGGAAAATCTACCGGCGGTGGCGTTAACATCTCGGCGTCCCACTCCGGCGGCGACGACATGGGGTCGACATCGACGGGATCGATGGAGGCGGCAACGGCGGCGGGCGCTGATATATCGGGCGAGAACGAGAAATTGAAGAAGGACAACGAGAAATTGAGCGGCGAGTTAGCGCTGGCGAAGAAACAATGCGAGGAGTTGGTGGCGTTTCTTAGAGACTCGCTGAACGTGAGCCCCGATGTGATAGAGCGCATCATTCGGCAAGGAACGTGTGTGTCCAGCAACAATGATGCGGTGCGTTTTGATGCTATTATTAATAATGATCTTGATGACGACGAAAATGCGGTAGGTGAGTGTGAACCACAACAACCACCACCCAAAGGTGACAATGGAGAAAGTTTGAAACTATTTGGGGTTTGGTTGAAGGGTCAAAATGGGAAAGAGAATTCAATTGGTAAATGCCGCAAGAGAGGGCGCCAAGACTACCCTATTGCTGCCACTGCCAAGGAATTGAAGACCCTAGTCTAG

>Glyma17g20070.1   sequence type=predicted peptide   gene model=Glyma17g20070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSQQQRSTPAPFLTKTYLLVDDPATDDVVSWSEGGNTFVVWKHADFAKDLLPKYFKHNNFSSFVRQLNTYGFRKTVPDKWEFANEYFKRGQTDLLAEIRRRKVVSPVTGKSTGGGVNISASHSGGDDMGSTSTGSMEAATAAGADISGENEKLKKDNEKLSGELALAKKQCEELVAFLRDSLNVSPDVIERIIRQGTCVSSNNDAVRFDAIINNDLDDDENAVGECEPQQPPPKGDNGESLKLFGVWLKGQNGKENSIGKCRKRGRQDYPIAATAKELKTLV*







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