Report for Sequence Feature Glyma17g20070
Feature Type: gene_model
Chromosome: Gm17
Start: 18609225
stop: 18613267
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g20070
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G36990 AT
Annotation by Michelle Graham. TAIR10: heat shock factor 4 | chr4:17440660-17441706 FORWARD LENGTH=284
SoyBase E_val: 2.00E-79 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0006984 GO-bp
Annotation by Michelle Graham. GO Biological Process: ER-nucleus signaling pathway
SoyBase N/A ISS
GO:0009407 GO-bp
Annotation by Michelle Graham. GO Biological Process: toxin catabolic process
SoyBase N/A ISS
GO:0009408 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to heat
SoyBase N/A ISS
GO:0009414 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to water deprivation
SoyBase N/A ISS
GO:0009737 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus
SoyBase N/A ISS
GO:0010583 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone
SoyBase N/A ISS
GO:0030968 GO-bp
Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response
SoyBase N/A ISS
GO:0034976 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress
SoyBase N/A ISS
GO:0042538 GO-bp
Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response
SoyBase N/A ISS
GO:0045892 GO-bp
Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
GO:0043565 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding
SoyBase N/A ISS
PTHR10015 Panther
HEAT SHOCK TRANSCRIPTION FACTOR
JGI ISS
PTHR10015:SF7 Panther
HEAT SHOCK TRANSCRIPTION FACTOR
JGI ISS
PF00447 PFAM
HSF-type DNA-binding
JGI ISS
UniRef100_I1MVX9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MVX9_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q43457 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Heat shock transcription factor 34 n=1 Tax=Glycine max RepID=Q43457_SOYBN
SoyBase E_val: 5.00E-89 ISS
Expression Patterns of Glyma17g20070
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma17g20070 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g174900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g20070
Coding sequences of Glyma17g20070
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g20070.1 sequence type=CDS gene model=Glyma17g20070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCACAGCAGCAGCGTTCGACGCCGGCGCCGTTCTTGACGAAGACGTATCTGCTGGTGGATGACCCCGCCACCGACGACGTCGTTTCGTGGAGCGAAGGTGGCAATACCTTCGTCGTTTGGAAACACGCCGATTTCGCTAAGGACTTGCTTCCGAAGTACTTCAAGCATAATAATTTCTCCAGCTTCGTTCGCCAACTCAACACCTATGGATTCCGAAAAACTGTTCCCGACAAATGGGAATTTGCCAATGAGTATTTCAAGCGAGGACAGACGGATCTTCTCGCCGAGATCAGGCGGCGGAAGGTGGTGTCTCCGGTGACCGGAAAATCTACCGGCGGTGGCGTTAACATCTCGGCGTCCCACTCCGGCGGCGACGACATGGGGTCGACATCGACGGGATCGATGGAGGCGGCAACGGCGGCGGGCGCTGATATATCGGGCGAGAACGAGAAATTGAAGAAGGACAACGAGAAATTGAGCGGCGAGTTAGCGCTGGCGAAGAAACAATGCGAGGAGTTGGTGGCGTTTCTTAGAGACTCGCTGAACGTGAGCCCCGATGTGATAGAGCGCATCATTCGGCAAGGAACGTGTGTGTCCAGCAACAATGATGCGGTGCGTTTTGATGCTATTATTAATAATGATCTTGATGACGACGAAAATGCGGTAGGTGAGTGTGAACCACAACAACCACCACCCAAAGGTGACAATGGAGAAAGTTTGAAACTATTTGGGGTTTGGTTGAAGGGTCAAAATGGGAAAGAGAATTCAATTGGTAAATGCCGCAAGAGAGGGCGCCAAGACTACCCTATTGCTGCCACTGCCAAGGAATTGAAGACCCTAGTCTAG
Predicted protein sequences of Glyma17g20070
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g20070.1 sequence type=predicted peptide gene model=Glyma17g20070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSQQQRSTPAPFLTKTYLLVDDPATDDVVSWSEGGNTFVVWKHADFAKDLLPKYFKHNNFSSFVRQLNTYGFRKTVPDKWEFANEYFKRGQTDLLAEIRRRKVVSPVTGKSTGGGVNISASHSGGDDMGSTSTGSMEAATAAGADISGENEKLKKDNEKLSGELALAKKQCEELVAFLRDSLNVSPDVIERIIRQGTCVSSNNDAVRFDAIINNDLDDDENAVGECEPQQPPPKGDNGESLKLFGVWLKGQNGKENSIGKCRKRGRQDYPIAATAKELKTLV*