Glyma17g20056 - SoyBase

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Report for Sequence Feature Glyma17g20056

Feature Type:	gene_model
Chromosome:	Gm17
Start:	18567938
stop:	18568938
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g20056

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PF00098	PFAM	Zinc knuckle	JGI		ISS
UniRef100_I1IP54	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Brachypodium distachyon RepID=I1IP54_BRADI	SoyBase	E_val: 2.00E-11	ISS

Expression Patterns of Glyma17g20056

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g20056 not represented in the dataset	Glyma17g20056 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g20056 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma17g20056

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g20056

Limit To All Plant Sequences

>Glyma17g20056.1   sequence type=CDS   gene model=Glyma17g20056   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAGCAAGAGCCGAAACATATCTAGGAGATATAGCTAGAGCCTATTGGGAATCTTTCAAACAAACTTTCCCAAAACAAATCAAAACAAATCTAATAGACCCTGGTCCAAACATCTACAATTTCTTTAGCCTAATACAAAGAATTTTTACAACCCAATCTGTAAATGATGGAAATACCATCAAACAAAAGATTTATTTAGGCAACCTAGAAAGGCTCTCTATAAGTTATTTTGGTAAAATAAAAGAAATTACCCAAGCTTATCTAATGTATGCCTCTATAATCTATAAACAGATTTACACTCCTCAACAATACCATAAAGAAATTAGGAGAAAAAGACCTCAGTACAGACCTCCCAATAAACAACCCTCAAGGAAAAAGAATCCAACTCGTAGGTATTCAATTAGAGCCTCTAATTCTAGAAAACCTACTCTTAACAAAGAAAGACATGTCAAAAAACTTAGAGATAACAAAACATATACAAAACAATTAGAATGTTATGCTTGCCACCAACCAGGACATTACTCCAAAGATTGTCCAAATAAAACCAATCTATTTACAATAGAAGCAGAATTAATGAAAAGTTGTAGGATGAATTTCATTCCAATAAATGAGACAGTCTCTACTGACTCAGAAATATATTCAATAGTTAGTTGGTCTGACTATACTTTTGAAGAAGAACTTAACAAAGATTATAAAATCTTGAATGAATTCACTAGAAATGAGTATATTAATATGTACCCAGTGGATGACAAATACAATCAGTATGGAGAAACCTTGATGATTTAG

Predicted protein sequences of Glyma17g20056

Limit To All Plant Sequences

>Glyma17g20056.1   sequence type=predicted peptide   gene model=Glyma17g20056   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIARAETYLGDIARAYWESFKQTFPKQIKTNLIDPGPNIYNFFSLIQRIFTTQSVNDGNTIKQKIYLGNLERLSISYFGKIKEITQAYLMYASIIYKQIYTPQQYHKEIRRKRPQYRPPNKQPSRKKNPTRRYSIRASNSRKPTLNKERHVKKLRDNKTYTKQLECYACHQPGHYSKDCPNKTNLFTIEAELMKSCRMNFIPINETVSTDSEIYSIVSWSDYTFEEELNKDYKILNEFTRNEYINMYPVDDKYNQYGETLMI*

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