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Report for Sequence Feature Glyma17g20030

Feature Type:gene_model
Chromosome:Gm17
Start:18555048
stop:18556255
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g20030
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G67020AT Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50340.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:26749962-26751146 FORWARD LENGTH=394 SoyBaseE_val: 6.00E-31ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_UPI0001BA912DUniRef Annotation by Michelle Graham. Best UniRef hit: UPI0001BA912D related cluster n=1 Tax=unknown RepID=UPI0001BA912D SoyBaseE_val: 6.00E-149ISS

Expression Patterns of Glyma17g20030
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g20030 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g174600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g20030
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g20030
>Glyma17g20030.1   sequence type=CDS   gene model=Glyma17g20030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTCGACGTGGACCGCAGACCCACCGGTCCGAACCCGGCTCACGCAGCCGGTCTAAGGCGCCTTTCGGCTCGAGCCGCTTCGGTCTCCACCCCCACCGTTCGCAACCGCAACAGCCTACACTCGTTCTCCGCGCTGTCCGAAAAAGTCATAACCCACCTCAGTAGCTCGGGAATACAGCTCCACCCAAGTCACGGCGCCGAGTTCGCTCGCTCCGCTGACTCGGATCCCATCCTCAGGAAGCAGAGATCCGTCTCCGCCGCCAGATTCCCCGTCCCCGGCTTCTCCCGGCACAGCCTGGACGCCGCCGTGGACCTCCGCCGGAGATCGAAGTGGGTGGAGGGATATGTGGGGATGATGGGTTCGGTTCTGAGAGAAGGAGGGTGGAGCGAATCGGATATATCGGAAATGGTTTCAGGTTCGGGTTCGGTTCTGTTGGATAATGAAGAGGTTTTGGATGCTTTGGTTTCGAAGGCAGAGAGGTTTTCGGACTCGTTACGAAAATCCGGGTGGAGCTCCGAGGAAGTTAAGGATGCGTTGGGTTTGGATTTGCGACCAGAGAAGAAGGGAGGGAGACCGCCTAAGAAGGTTGCCACTCAACTCGTGGGAAGGATAGGGAAACTGGTGGAGTCGGTTTCCCGGTCATGA
Predicted protein sequences of Glyma17g20030
>Glyma17g20030.1   sequence type=predicted peptide   gene model=Glyma17g20030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVDVDRRPTGPNPAHAAGLRRLSARAASVSTPTVRNRNSLHSFSALSEKVITHLSSSGIQLHPSHGAEFARSADSDPILRKQRSVSAARFPVPGFSRHSLDAAVDLRRRSKWVEGYVGMMGSVLREGGWSESDISEMVSGSGSVLLDNEEVLDALVSKAERFSDSLRKSGWSSEEVKDALGLDLRPEKKGGRPPKKVATQLVGRIGKLVESVSRS*






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