Glyma17g20020 - SoyBase

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Report for Sequence Feature Glyma17g20020

Feature Type:	gene_model
Chromosome:	Gm17
Start:	18532005
stop:	18545243
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g20020

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G67030	AT	Annotation by Michelle Graham. TAIR10: zeaxanthin epoxidase (ZEP) (ABA1) \| chr5:26753745-26757090 REVERSE LENGTH=667	SoyBase	E_val: 0	ISS
GO:0006970	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to osmotic stress	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009688	GO-bp	Annotation by Michelle Graham. GO Biological Process: abscisic acid biosynthetic process	SoyBase	N/A	ISS
GO:0010114	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to red light	SoyBase	N/A	ISS
GO:0010182	GO-bp	Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway	SoyBase	N/A	ISS
GO:0010264	GO-bp	Annotation by Michelle Graham. GO Biological Process: myo-inositol hexakisphosphate biosynthetic process	SoyBase	N/A	ISS
GO:0016123	GO-bp	Annotation by Michelle Graham. GO Biological Process: xanthophyll biosynthetic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0009540	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zeaxanthin epoxidase [overall] activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
KOG2614	KOG	Kynurenine 3-monooxygenase and related flavoprotein monooxygenases	JGI		ISS
PTHR13789	Panther	MONOOXYGENASE	JGI		ISS
PTHR13789:SF10	Panther	SALICYLATE HYDROXYLASE	JGI		ISS
PF00498	PFAM	FHA domain	JGI		ISS
PF01494	PFAM	FAD binding domain	JGI		ISS
UniRef100_I1MVX7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zeaxanthin epoxidase, chloroplastic n=2 Tax=Glycine max RepID=I1MVX7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1MVX7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Zeaxanthin epoxidase, chloroplastic n=2 Tax=Glycine max RepID=I1MVX7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g20020

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g20020 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g174500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g20020

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g20020

Limit To All Plant Sequences

>Glyma17g20020.1   sequence type=CDS   gene model=Glyma17g20020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACTACCTTATGTTACAATTCTCTTAACCCTTCAACAACCGTTTTCTCAAGAACCCATTTCTCAGTTCCCTTGAATAAAGAGCTTCCACTGGATGCTTCACCTTTTGTTGTTGGCTATAACTGTGGTGTAGGATGCAGAACAAGGAAGCAAAGGAAGAAAGTGATGCATGTGAAGTGTGCAGTGGTGGAGGCTCCACCAGGTGTTTCACCCTCAGCAAAAGATGGGAATGGAACCACCCCTTCGAAGAAGCAGCTTCGTATACTTGTGGCTGGTGGAGGGATTGGAGGGTTGGTTTTTGCTTTGGCTGCAAAGAGAAAGGGGTTTGAGGTGATGGTGTTTGAGAAGGACTTGAGTGCTATAAGAGGGGAGGGACAGTATAGGGGTCCAATTCAGATTCAGAGCAATGCTTTGGCTGCTTTGGAAGCTATTGATTCAGAGGTTGCTGATGAAGTTATGAGAGTTGGTTGCATCACTGGTGATAGAATCAATGGACTTGTAGATGGGGTTTCTGGTTCTTGGTACGTCAAGTTTGATACATTCACTCCTGCAGTGGAACGTGGGCTTCCTGTCACAAGAGTTATTAGTCGAATGGTTTTACAAGAGATCCTTGCTCGCGCAGTTGGGGAAGATATCATTATGAATGCCAGTAATGTTGTTAATTTTGTGGATGATGGAAACAAGGTAACAGTAGAGCTAGAGAATGGTCAGAAATATGAAGGAGATGTCTTGGTTGGAGCGGATGGAATATGGTCCAAGGTGAGGAAGCAGTTATTTGGGCTCACAGAAGCTGTTTACTCTGGTTATACTTGTTATACTGGCATTGCAGATTTTGTGCCTGCTGACATTGAAACTGTTGGATACCGAGTATTCTTGGGACACAAACAATACTTTGTATCTTCAGATGTTGGTGCGGGAAAGATGCAATGGTATGCATTTCACAAAGAACCTCCTGGTGGTGTTGATGAGCCCAACGGAAAAAAGGAAAGGTTGCTTAGGATATTTGAGGGCTGGTGTGATAATGCTGTAGATCTGATACTTGCCACAGAAGAAGAAGCAATTCTAAGACGAGACATATATGACAGGATACCAACATTGACATGGGGAAAGGGTCGCGTGACTTTGCTTGGTGATTCCGTCCATGCCATGCAGCCAAATATGGGCCAAGGAGGGTGCATGGCTATTGAGGACAGTTATCAACTTGCATGGGAGTTGGAGAATGCATGGGAACAAAGTATTAAATCAGGGAGTCCAATTGACATTGATTCTTCCCTAAGGAGCTACGAGAGAGAAAGAAGACTACGAGTTGCCATTATTCATGGAATGGCTAGAATGGCGGCTCTCATGGCTTCCACTTACAAGGCATATCTGGGTGTTGGTCTTGGCCCTTTAGAATTTTTGACTAAGTTTCGTATACCACATCCTGGAAGAGTTGGAGGAAGGTTTTTTGTTGACATCATGATGCCTTCTATGTTGAGCTGGGTCTTAGGTGGCAATAGCGACAAACTTGAGGGCAGACCACTAAGTTGCAGGCTCACAGACAAAGCAAATGATCAGTTACGTAGATGGTTTGAAGATGATGAAGCACTCGAGCGTGCTATTAATGGAGAATGGATTTTATTACCGCATGGAGATGGAACAGGTCTTTCAAAGCCTATATCTTTAAGTCGAAATGAGATGAAACCCTTCATAATCGGGAGTGCACCAATGCAAGATAATTCAGGCAGTTCAGTTACAATTTCTTCACCACAGGTTTCTCCAACGCATGCTCGAATTAACTATAAGGATGGTGCCTTCTTCTTGATTGATTTACGGAGTGAGCATGGCACCTGGATCATTGACAACGAAGGAAAGCAGTACCGGGTACCTCCTAATTATCCTGCTCGCATCCGTCCATCTGATGTTATTCAGTTTGGTTCTGAGAAGGTTTCGTTCCGTGTTAAGGTGACAAGCTCTGTTCCAAGAGTCTCAGAAAATGAAAGCACACTAGCTTTGCAGGGAGTATGA

Predicted protein sequences of Glyma17g20020

Limit To All Plant Sequences

>Glyma17g20020.1   sequence type=predicted peptide   gene model=Glyma17g20020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATTLCYNSLNPSTTVFSRTHFSVPLNKELPLDASPFVVGYNCGVGCRTRKQRKKVMHVKCAVVEAPPGVSPSAKDGNGTTPSKKQLRILVAGGGIGGLVFALAAKRKGFEVMVFEKDLSAIRGEGQYRGPIQIQSNALAALEAIDSEVADEVMRVGCITGDRINGLVDGVSGSWYVKFDTFTPAVERGLPVTRVISRMVLQEILARAVGEDIIMNASNVVNFVDDGNKVTVELENGQKYEGDVLVGADGIWSKVRKQLFGLTEAVYSGYTCYTGIADFVPADIETVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPPGGVDEPNGKKERLLRIFEGWCDNAVDLILATEEEAILRRDIYDRIPTLTWGKGRVTLLGDSVHAMQPNMGQGGCMAIEDSYQLAWELENAWEQSIKSGSPIDIDSSLRSYERERRLRVAIIHGMARMAALMASTYKAYLGVGLGPLEFLTKFRIPHPGRVGGRFFVDIMMPSMLSWVLGGNSDKLEGRPLSCRLTDKANDQLRRWFEDDEALERAINGEWILLPHGDGTGLSKPISLSRNEMKPFIIGSAPMQDNSGSSVTISSPQVSPTHARINYKDGAFFLIDLRSEHGTWIIDNEGKQYRVPPNYPARIRPSDVIQFGSEKVSFRVKVTSSVPRVSENESTLALQGV*

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