Glyma17g20000 - SoyBase

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Report for Sequence Feature Glyma17g20000

Feature Type:	gene_model
Chromosome:	Gm17
Start:	18481133
stop:	18485397
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g20000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G36970	AT	Annotation by Michelle Graham. TAIR10: Remorin family protein \| chr4:17429826-17431459 REVERSE LENGTH=427	SoyBase	E_val: 2.00E-51	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
PF03763	PFAM	Remorin, C-terminal region	JGI		ISS
UniRef100_G7K6N7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Remorin-like protein n=1 Tax=Medicago truncatula RepID=G7K6N7_MEDTR	SoyBase	E_val: 6.00E-118	ISS
UniRef100_I1MVX6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MVX6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g20000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g20000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g174300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g20000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g20000

Limit To All Plant Sequences

>Glyma17g20000.1   sequence type=CDS   gene model=Glyma17g20000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAAGAGTTCTTCATCATCATTCCAGAACTTGGGATCTTTCCCAAGTCCAGGGGCACCCTATTATAGGGAGAGAAACATTAGGAGCCAAAAGGGTTGGTGCTCAGAGAGAGTTTCAAATTCAAAGCTTTCAACTAGTGCTAGTAGCATAAGCAGAAGACACACTATGGCAGGGTTAATAACAACACCCTTTTGTGGTGGAAGAACACTGCCATCTAAATGGGATGAAGCTGAGAGGTGGATTTGTAGCCCAGTTTCTGCGTATGCTGAGAGCAGAAGTTGTTCACATGCACAGCTTCAGCGAAGGCCAAAGTCAATAAGTGGCCCTATTGTGCCTCCTGGTGTGGCTTCTTTCTACTCAAATCAGGGTTTGGTTGTGAGAAACTTGGTGGTGGGTTCACCCTTCTCAACTGGGGTGTTGGCACCTGTTGCTGTTTCTGTTCACCACTTTGATGCACATGATGGCAATGTTTTTGGCTATGACTTGGACAGTGGAATGCAGTTTTCTAGGCCTGGGATCAATGAGAATGGCGTGGTGCTTTCTTCTTTGTCCAGTGCTGAACCCACGTGCTCTGAACAGCCCTGTGACCAATCATCTCCCATCTCTCAAGATGAGAAACAAGGAGCGATGAATGAGGAAAACGTAGCATCTCATTCCTCAAGGTGTGACAAAGGTACCCAAATGAGTCTAGGAGAGGCAGAGAATGATTCACATTCATCTCCTAAATCTTGTGCCACTTCAGTTGTGGAACAACAAGAATGGCATTCTCCTAAATTAGAGGTCAGAGATGTGGAAGTCGACAGCCAATCTACAATTATAAGGTGGTCCAAGAGGCATGCAACCAAATTGCCCAAAAAAGACACTTTACACAGCAAAGATTCAAGAGAGATTAGGGAAGAAGACCAAGCATCATGGGATATTGATGAGCCAAACATTGACACTTCCAAGTTACAGAGAGAGGAAGCCAAAATCATCGCATGGGAGAATTTGCAGAAAGCAAAGGCTGAAACTGCAATACGGAAACTTGAGATGAAATTGGAAAAGAAGAGATCGTCATCAATGGATAAGATTCTAAACAAGCTGAGAAGGGCACAGTTGAAAGCTGAAAATATGAGAAGCTCATTACCTGTACAACAGGGCCAGGAGGTTTCCAAGTGCACAGTATTTTCGTTCTCCAAATATGCTCAGATATGGTCTCCAACCACTTGCTTCAGAAGCCATGATCAGTGA

Predicted protein sequences of Glyma17g20000

Limit To All Plant Sequences

>Glyma17g20000.1   sequence type=predicted peptide   gene model=Glyma17g20000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKKSSSSSFQNLGSFPSPGAPYYRERNIRSQKGWCSERVSNSKLSTSASSISRRHTMAGLITTPFCGGRTLPSKWDEAERWICSPVSAYAESRSCSHAQLQRRPKSISGPIVPPGVASFYSNQGLVVRNLVVGSPFSTGVLAPVAVSVHHFDAHDGNVFGYDLDSGMQFSRPGINENGVVLSSLSSAEPTCSEQPCDQSSPISQDEKQGAMNEENVASHSSRCDKGTQMSLGEAENDSHSSPKSCATSVVEQQEWHSPKLEVRDVEVDSQSTIIRWSKRHATKLPKKDTLHSKDSREIREEDQASWDIDEPNIDTSKLQREEAKIIAWENLQKAKAETAIRKLEMKLEKKRSSSMDKILNKLRRAQLKAENMRSSLPVQQGQEVSKCTVFSFSKYAQIWSPTTCFRSHDQ*

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