SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma17g19960

Feature Type:gene_model
Chromosome:Gm17
Start:18403357
stop:18413595
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g19960
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G67050AT Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr5:26759482-26761165 REVERSE LENGTH=477 SoyBaseE_val: 2.00E-147ISS
GO:0006629GO-bp Annotation by Michelle Graham. GO Biological Process: lipid metabolic process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0004806GO-mf Annotation by Michelle Graham. GO Molecular Function: triglyceride lipase activity SoyBaseN/AISS
KOG4569 KOG Predicted lipase JGI ISS
PTHR10992Panther ALPHA/BETA HYDROLASE RELATED JGI ISS
PTHR10992:SF274Panther TRIACYLGLYCEROL LIPASE JGI ISS
PF01764PFAM Lipase (class 3) JGI ISS
UniRef100_G7J382UniRef Annotation by Michelle Graham. Most informative UniRef hit: Lipase n=1 Tax=Medicago truncatula RepID=G7J382_MEDTR SoyBaseE_val: 2.00E-162ISS
UniRef100_I1MVX4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MVX4_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g19960
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g19960 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g173800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g19960
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g19960
>Glyma17g19960.1   sequence type=CDS   gene model=Glyma17g19960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTAGTGATAGTAATGAAAAGCCTTTTTCTTCTTCCAAATGTATGCTGTTGAAACCCGAAAAGATGGGTTTCTTTCAACTCTTTATGGTCTTGTTTGGAACAGACTTAAACGAAATAGACTTTGTGCACTACCTTGATTTTATTGTGGAGCCAAGGTTCTACCCAAAGTGGCTTATATTTCTATCGCTCTTAATACAAAAGGTTCTACACTCCATGGCTTATTTATTACAATGTATTGGCGATATCGTTGAGTCACTTTTGAACCCGCAAGCTTCATCCAACGACAATTTCTTCATGCTTGTATTTAACTGTCTCAGAGGTAAGCAGATACTGGATAAAAATTCTGCAAATTATATCTCATTCATTGGTCATTTGGACAAGCGAGTGGGCTTGTTAGATAATGGCATCAAACGTGAAGACCCCAACAAGTACAATGCTGCTTTGTCTATGATGGCTTCTAAAGTATCGTACGAGAATCAAGCTAACGTTCATGCTATTGTCGTAGATCAATGGAAGATGGAGCTGCTTGAATGTGGTGACTACTGGAATGACTATCAAGAAAAAGCTACAACTCAGGCTTTCGTTATGTTAGACAAAAGTGAAGACCAAGATAACTATGTTGTAGCTTTCAGAGGAACCGAACCCTTTGATGCTGATGCATGGTCCACTGATATAGACATTTCATGGTTTGAAATTCCTGGTGTAGGAAGAACCCATGCTGGCTTCATGAAAGCCCTAGGGTTACTGTTAGACTTCAATAAAGAAGAGTTGAGATGGCCTAAAGAAATTGAAACCGATGAGAACCGTCCACGTGTCTATTACTCCATAAGGGATTTGCTAAAGAAGTGTTTGAATAGAAATGATAAAGCAAAGTTTATTCTTACGGGTCATAGTCTTGGTGGAGCACTTGCAATTCTTTTTCCCGCTATGCTAATTTTGCATGCTGAGACATTTCTTTTGGAAAGGCTTGAAGGGGTGTACACATTTGGACAGCCTAGGGTTGGAGATGAAACATTTGCTAAATACATGGAAAATCAATTGAAACATTATGGCATTAAGTATTTTAGGTTTGTTTACTGCAACGATATTGTTCCTAGGTTGCCCTTTGATGAAGATATCATGAAATTTGAGCATTTTGGGACATGTCTTTATTATGACAGGAGCTATACATGCAAGAAAGTGCAAGAGGAGCCAAATAAGAACTACTTCTCGTGGAAAGCTTTGATACCGAAGAAGGTGAATGCTTTCTGGGAGCTTGTAAGGAGTTTCACTATTGTGCGTAAATATGGACCTGAGTATCAAGAAGGATGGCTTCTAAGATTTATTAGGCTTGTGGGCATAGTACTTCTTGCTGGATTACCAGCTCATTCTCCCCAGGATTATGTTAATGTGACCCGATTGGGGCTTCCCTCACTAGATTTGGATTAA
Predicted protein sequences of Glyma17g19960
>Glyma17g19960.1   sequence type=predicted peptide   gene model=Glyma17g19960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSDSNEKPFSSSKCMLLKPEKMGFFQLFMVLFGTDLNEIDFVHYLDFIVEPRFYPKWLIFLSLLIQKVLHSMAYLLQCIGDIVESLLNPQASSNDNFFMLVFNCLRGKQILDKNSANYISFIGHLDKRVGLLDNGIKREDPNKYNAALSMMASKVSYENQANVHAIVVDQWKMELLECGDYWNDYQEKATTQAFVMLDKSEDQDNYVVAFRGTEPFDADAWSTDIDISWFEIPGVGRTHAGFMKALGLLLDFNKEELRWPKEIETDENRPRVYYSIRDLLKKCLNRNDKAKFILTGHSLGGALAILFPAMLILHAETFLLERLEGVYTFGQPRVGDETFAKYMENQLKHYGIKYFRFVYCNDIVPRLPFDEDIMKFEHFGTCLYYDRSYTCKKVQEEPNKNYFSWKALIPKKVNAFWELVRSFTIVRKYGPEYQEGWLLRFIRLVGIVLLAGLPAHSPQDYVNVTRLGLPSLDLD*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo