Glyma17g19920 - SoyBase

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Report for Sequence Feature Glyma17g19920

Feature Type:	gene_model
Chromosome:	Gm17
Start:	18356154
stop:	18359385
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g19920

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G67050	AT	Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein \| chr5:26759482-26761165 REVERSE LENGTH=477	SoyBase	E_val: 3.00E-128	ISS
GO:0006629	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid metabolic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0004806	GO-mf	Annotation by Michelle Graham. GO Molecular Function: triglyceride lipase activity	SoyBase	N/A	ISS
KOG4569	KOG	Predicted lipase	JGI		ISS
PTHR10992	Panther	ALPHA/BETA HYDROLASE RELATED	JGI		ISS
PTHR10992:SF274	Panther	TRIACYLGLYCEROL LIPASE	JGI		ISS
PF01764	PFAM	Lipase (class 3)	JGI		ISS
UniRef100_G7K6N4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lipase n=1 Tax=Medicago truncatula RepID=G7K6N4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MVX3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MVX3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g19920

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g19920 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g173600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g19920

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g19920

Limit To All Plant Sequences

>Glyma17g19920.2   sequence type=CDS   gene model=Glyma17g19920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACCGATTGCAATTGCAACAAGGGCTTCGCTGATAGTTACATGTTGTTGAAGCCCGAAGATGCGAGTTTCTTTGATCTCTTTCGTGTCTTATTTAAGGGAAACTTATCACAGAGGAACTTTGTGGAAAGCCATGCAGATGATGATGCTTTGGACGAAAGTTTGGGCCATCGATGGCTTATAGTTATTTCTATTTTGGCCCAGAAGCTTTTGCAGCTTGTTGCCAAGCCACTCTCACTCTTTGGGAGTTGCGTTGAGTTTTTGCTCAACCTTGTAGCCCTTAATGGAGGTGTATTCAGCATCGTCCTTAATTTTCTCGGAGGTAAATTGGTCTTGCCCAATCCTGAATCAGAAAATTATTTATCCTTTATTGGAAATTTGGACATTCGAGCAAAGTTGGAAGACGCCGTCCAGCGCGAAGATTCCAAGTACTATCCAGCACTTTCGATGATGGCTTCCAAAGCATGCTACAATAACGCGGCTTACCTTAAAACTACTGTGGAAGATTACTGGAAGATGGAATTTGTGGGGTTTTACAACTGCTTGAATGAGTATCAAGGAAAGACAACAACTCAAGTCTTGATTGCCTTGGATAAGCATGAGGATCGCCATACCTATGTTGTTGCCTTCAGAGGAACAGAAGCCTTTGATGCCGATGCATGGTGCACTGATCTTGACATCTCATGGTATGGTATTCCTGGCGTTGGAAGAATGCATGGTGGTTTTATGAAAGCCTTAGGGCTAAAACAGAATGTTGGATGGCCTAAGGAAATTGGAGAACAAGACGAGAATCTTCCCCCCTTAGCGTACTATGTTATCAGGGACATTCTAAGGAAAGGTTTAAGTGAAAATGACAAAGCTAATTTTATAGTGACAGGGCATAGTTTGGGAGGAGCACTTGCAATCCTCTTTGGGACAATCTTGTGTTTGCACGATGAGACATTGTTGTTGGAGAGGTTGGAAGGAATCTACACCTTTGGACAACCAAGAGTAGGAGATGAAGCATATGCAAACTATACGAGACAAAAATTTAAGGAACATTATATAAGGTATTGTAGGTTTGTTTACTGTAATGATCTTGTTCCGAGGTTGCCCTACGATGACAAGGAAATGATGTTCAAGCACTTTGGGACATGTCTTTTCTTTAACAGACGCTATGAACTCGAGGTAAGTGTTGAGATTTTAAGCAAAGTATTAAATCACTCAAGTAATAAAATTTTTTACTATATTGTCGGAGACTTGTATCTCATTAATGGGACAAAATTTTTAGTAAAACACAAATATAAGATTATTATAATAATTAATAAGGATAACACAAAATAG

Predicted protein sequences of Glyma17g19920

Limit To All Plant Sequences

>Glyma17g19920.2   sequence type=predicted peptide   gene model=Glyma17g19920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATDCNCNKGFADSYMLLKPEDASFFDLFRVLFKGNLSQRNFVESHADDDALDESLGHRWLIVISILAQKLLQLVAKPLSLFGSCVEFLLNLVALNGGVFSIVLNFLGGKLVLPNPESENYLSFIGNLDIRAKLEDAVQREDSKYYPALSMMASKACYNNAAYLKTTVEDYWKMEFVGFYNCLNEYQGKTTTQVLIALDKHEDRHTYVVAFRGTEAFDADAWCTDLDISWYGIPGVGRMHGGFMKALGLKQNVGWPKEIGEQDENLPPLAYYVIRDILRKGLSENDKANFIVTGHSLGGALAILFGTILCLHDETLLLERLEGIYTFGQPRVGDEAYANYTRQKFKEHYIRYCRFVYCNDLVPRLPYDDKEMMFKHFGTCLFFNRRYELEVSVEILSKVLNHSSNKIFYYIVGDLYLINGTKFLVKHKYKIIIIINKDNTK*

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