SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma17g19845

Feature Type:gene_model
Chromosome:Gm17
Start:18252342
stop:18268051
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g19845
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G42800AT Annotation by Michelle Graham. TAIR10: dihydroflavonol 4-reductase | chr5:17164296-17165864 REVERSE LENGTH=382 SoyBaseE_val: 2.00E-22ISS
GO:0009718GO-bp Annotation by Michelle Graham. GO Biological Process: anthocyanin-containing compound biosynthetic process SoyBaseN/AISS
GO:0009744GO-bp Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus SoyBaseN/AISS
GO:0010224GO-bp Annotation by Michelle Graham. GO Biological Process: response to UV-B SoyBaseN/AISS
GO:0044237GO-bp Annotation by Michelle Graham. GO Biological Process: cellular metabolic process SoyBaseN/AISS
GO:0042406GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extrinsic to endoplasmic reticulum membrane SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0045552GO-mf Annotation by Michelle Graham. GO Molecular Function: dihydrokaempferol 4-reductase activity SoyBaseN/AISS
GO:0050662GO-mf Annotation by Michelle Graham. GO Molecular Function: coenzyme binding SoyBaseN/AISS
PTHR10366Panther NAD DEPENDENT EPIMERASE/DEHYDRATASE JGI ISS
PTHR10366:SF9Panther NAD(P)H STEROID DEHYDROGENASE-RELATED JGI ISS
UniRef100_A2IBG7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Dihydroflavonol-4-reductase 2 n=2 Tax=Glycine max RepID=A2IBG7_SOYBN SoyBaseE_val: 9.00E-26ISS
UniRef100_UPI000233E0EDUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E0ED related cluster n=1 Tax=unknown RepID=UPI000233E0ED SoyBaseE_val: 3.00E-30ISS

Expression Patterns of Glyma17g19845
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g19845 not represented in the dataset
Glyma17g19845 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g19845 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma17g19845
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g19845
>Glyma17g19845.1   sequence type=CDS   gene model=Glyma17g19845   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAAGGTGAAGCATTTGGTGGAGCCGCCAGATTCCAAGACCAAATTGTCTCTGTGGAAGGCTGATCTTGCTCAAGAGGGAAGCTTTGATGAAGCCATTAAAGGTTGCACTGGTGTTTTCCATGTGGCAACCCCCATGGATTTTGACTCCAAGGACACTGAGGGGAAAATAAAGCAGACAATGGACAAGGCCTTTTGGGATGGTATCATGGAAAATGAAGCAGGTGAAAAAAGGCCTTGCATCACATTCTTCCAAAGACATGGGTGGTCAATTATGAAATTTATCCCTTATGGTACGGTATATGTAGGAATATGTGTTGTATAA
Predicted protein sequences of Glyma17g19845
>Glyma17g19845.1   sequence type=predicted peptide   gene model=Glyma17g19845   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKKVKHLVEPPDSKTKLSLWKADLAQEGSFDEAIKGCTGVFHVATPMDFDSKDTEGKIKQTMDKAFWDGIMENEAGEKRPCITFFQRHGWSIMKFIPYGTVYVGICVV*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo