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Report for Sequence Feature Glyma17g19790

Feature Type:gene_model
Chromosome:Gm17
Start:18122645
stop:18124707
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g19790
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G45688AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42860.1); Has 258 Blast hits to 242 proteins in 39 species: Archae - 0; Bacteria - 11; Metazoa - 10; Fungi - 14; Plants - 198; Viruses - 17; Other Eukaryotes - 8 (source: NCBI BLink). | chr1:17191502-17192870 FORWARD LENGTH=342 SoyBaseE_val: 2.00E-109ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0048767GO-bp Annotation by Michelle Graham. GO Biological Process: root hair elongation SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF03168PFAM Late embryogenesis abundant protein JGI ISS
UniRef100_I1MVW9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MVW9_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q7XST6UniRef Annotation by Michelle Graham. Most informative UniRef hit: OSJNBa0039K24.20 protein n=2 Tax=Oryza sativa Japonica Group RepID=Q7XST6_ORYSJ SoyBaseE_val: 1.00E-107ISS

Expression Patterns of Glyma17g19790
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g19790 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g172900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g19790
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g19790
>Glyma17g19790.1   sequence type=CDS   gene model=Glyma17g19790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCCCAACGACAACATGGCAATGCTGGCCAAGACCGACTCCGAGGTTAGCAGCCTCACGCAGTCCTCGCCGACGCGATCCCCGCGACGGGCAGTGTACTATGTGCAGAGCCCGTCGCGAGACTCATCGCACGACGGGGAGAAGACTACGAACTCGTTTCACTCGAGTCCGCTGCAGAGCCCATTGGGCTCCCCGCCCCACTCCCACTCCAACTCCTCCTTGGGCCATCACTCGCGCGAGTCCGCCTCCACGCGCTTCTCTGGCTCGCGCAAGAGCAGCTCCTCGGGCAACAACCGCAAGGGCCCGTGGCGGCCCTGGAAGGACCAGTTCCATGCCATCGAGGAGGAGGGCCTCATCGATGCTCACGACAATGCCCGTGGCTTCCCTCGTTGCTGCTATTTCCCAGCATTTGTCATCGGCTTCGTCCTCCTCTTCTCCGCATTCTCCCTCATTCTCTGGGGTGCTAGTCGCCCCCAAAAGCCCGCCATTTCTCTCAAGAGTATAACCTTTGATCAATTCGTGATACAAGCCGGAGCGGACATGTCAGGAGTTGCCACAAGTTTGGTGTCCATGAATTCATCTGTGAAAATGACGTTTCGTAACACCGCTACATTTTTCGGGGTCCATGTGACCTCAACTCCCGTGGATCTCAATTATTATCAACTTACTCTAGCCACTGGAACTATGCCAAAGTTTTATCAATCTAGGAAGAGCCAAAGATCTGTTAGAGTGATGGTGATTGGGAGTCATATACCACTGTACGGAGGAGGAGCAAACCTGAACAGTGTGAACGGTAAACCGGTTGAACCGGTGCCACTGACGTTGAGCGTGATGGTGCGGTCTAGGGCTTATGTTTTGGGCAAATTGGTGAAGCCAAAGTTCTACAAGAAAATAGAGTGTTCCATCGTTATGGATCCGAAGAAGATGGGCAAGGCCATTTCACTGGTCAAGAAATGCACTTACCAGTAA
Predicted protein sequences of Glyma17g19790
>Glyma17g19790.1   sequence type=predicted peptide   gene model=Glyma17g19790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKPNDNMAMLAKTDSEVSSLTQSSPTRSPRRAVYYVQSPSRDSSHDGEKTTNSFHSSPLQSPLGSPPHSHSNSSLGHHSRESASTRFSGSRKSSSSGNNRKGPWRPWKDQFHAIEEEGLIDAHDNARGFPRCCYFPAFVIGFVLLFSAFSLILWGASRPQKPAISLKSITFDQFVIQAGADMSGVATSLVSMNSSVKMTFRNTATFFGVHVTSTPVDLNYYQLTLATGTMPKFYQSRKSQRSVRVMVIGSHIPLYGGGANLNSVNGKPVEPVPLTLSVMVRSRAYVLGKLVKPKFYKKIECSIVMDPKKMGKAISLVKKCTYQ*






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