Glyma17g18800 - SoyBase

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Report for Sequence Feature Glyma17g18800

Feature Type:	gene_model
Chromosome:	Gm17
Start:	16390681
stop:	16393213
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g18800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G34050	AT	Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr4:16310844-16311973 FORWARD LENGTH=259	SoyBase	E_val: 2.00E-129	ISS
GO:0006598	GO-bp	Annotation by Michelle Graham. GO Biological Process: polyamine catabolic process	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009698	GO-bp	Annotation by Michelle Graham. GO Biological Process: phenylpropanoid metabolic process	SoyBase	N/A	ISS
GO:0009805	GO-bp	Annotation by Michelle Graham. GO Biological Process: coumarin biosynthetic process	SoyBase	N/A	ISS
GO:0009963	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0019344	GO-bp	Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process	SoyBase	N/A	ISS
GO:0042398	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular modified amino acid biosynthetic process	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0008171	GO-mf	Annotation by Michelle Graham. GO Molecular Function: O-methyltransferase activity	SoyBase	N/A	ISS
GO:0042409	GO-mf	Annotation by Michelle Graham. GO Molecular Function: caffeoyl-CoA O-methyltransferase activity	SoyBase	N/A	ISS
KOG1663	KOG	O-methyltransferase	JGI		ISS
PTHR10509	Panther	O-METHYLTRANSFERASE	JGI		ISS
PF01596	PFAM	O-methyltransferase	JGI		ISS
UniRef100_C6SVC4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SVC4_SOYBN	SoyBase	E_val: 1.00E-179	ISS
UniRef100_Q43095	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Caffeoyl-CoA O-methyltransferase n=1 Tax=Populus tremuloides RepID=CAMT_POPTM	SoyBase	E_val: 2.00E-130	ISS

Expression Patterns of Glyma17g18800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g18800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g171100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g18800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g18800

Limit To All Plant Sequences

>Glyma17g18800.2   sequence type=transcript   gene model=Glyma17g18800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCATGTAAAACATCCACGAGATCCACGAGATCCACGAGATAAAGTTGTTGTCCGTAGTTTCTTACATTCACATTTCACACTCGTGTTGCTGTCTATAAATAGGACAATGATTTCATTGTAATAGGAAAACGATTATTTCTAGTCCCAAAGAGCTAACAAGAGATTCAAGACCGGCATGGCTAATGAAGAGGAACAGAAAAACCACCTCTTCGGCATCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGTTAAGCTCACGAATTCAAAGAACGCCTTGGAAATTGGTGTATTCACTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGACAATTACTTGAACTACCACAAGAGGGTACTAGAGCTTGTGAAGATTGGAGGACTGATCGGATACGATAACACCCTATGGGCTGGATCTGTGGCTGCACCACCCGATGCACCATTGATGGATTACATTAAGCCTCTTCGCGGCCATGTGATGGAGCTCAACAAGTATCTGGCTCAAGATTCGAGGATCGAGATTTGCCAGCTCCCCGTGGGTGATGGGATTACCCTGTGCCGCCGCATCATCTGATCATTTTCTCTTCATCTAGATTTTTCATGACAGATATTCCTTTCATTAAAACAGGTTGCGTGAATGGTGGAGTTCTCAAATGTTCTACTGTCTTTTCTAGATCTTTGTGTGTTTCTTGTCACGCTAGAAATTTAGCTGAAAGGATACAAATCAACATTTATCTTATTTATCTACTTGCTAATCCTGTATTCAGCTTTGGAATAGAGTTGCAAAAAAATGATTTTAATAAAATTAAGAGAGAAGCTATGTTAAAAAAGCATACTTTTCATGGATAAAATATGGAAATTAATTTTGAACCGTAGATCTAATTGGCCTTAATATAAAAAGGATAAATGACACCGAATTGTATCCGAT

Coding sequences of Glyma17g18800

Limit To All Plant Sequences

>Glyma17g18800.1   sequence type=CDS   gene model=Glyma17g18800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTAATGAAGAGGAACAGAAAAACCACCTCTTCGGCATCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGTTAAGCTCACGAATTCAAAGAACGCCTTGGAAATTGGTGTATTCACTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGATCTTGGCTTTGGATGTGAATCGCGAATACTATGAGTTAGGATTGCCAATAATTCAAAAAGCTGGAGTGGCTCACAAGATTGATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGACAATTACTTGAACTACCACAAGAGGGTACTAGAGCTTGTGAAGATTGGAGGACTGATCGGATACGATAACACCCTATGGGCTGGATCTGTGGCTGCACCACCCGATGCACCATTGATGGATTACATTAAGCCTCTTCGCGGCCATGTGATGGAGCTCAACAAGTATCTGGCTCAAGATTCGAGGATCGAGATTTGCCAGCTCCCCGTGGGTGATGGGATTACCCTGTGCCGCCGCATCATCTGA

>Glyma17g18800.2   sequence type=CDS   gene model=Glyma17g18800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTAATGAAGAGGAACAGAAAAACCACCTCTTCGGCATCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACTGAACATCATGGCAACACCAGCAGACGAAGGACAACTTCTGAGCATGCTTGTTAAGCTCACGAATTCAAAGAACGCCTTGGAAATTGGTGTATTCACTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGACAATTACTTGAACTACCACAAGAGGGTACTAGAGCTTGTGAAGATTGGAGGACTGATCGGATACGATAACACCCTATGGGCTGGATCTGTGGCTGCACCACCCGATGCACCATTGATGGATTACATTAAGCCTCTTCGCGGCCATGTGATGGAGCTCAACAAGTATCTGGCTCAAGATTCGAGGATCGAGATTTGCCAGCTCCCCGTGGGTGATGGGATTACCCTGTGCCGCCGCATCATCTGA

Predicted protein sequences of Glyma17g18800

Limit To All Plant Sequences

>Glyma17g18800.1   sequence type=predicted peptide   gene model=Glyma17g18800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANEEEQKNHLFGIKDLGHKTLLQSDALYQYILETSVYPREHECLKEIRKMTAKHPLNIMATPADEGQLLSMLVKLTNSKNALEIGVFTGYSLLSTALALPPDGKILALDVNREYYELGLPIIQKAGVAHKIDFREGPALPFLDEMLKDENKKGSLDFVFVDADKDNYLNYHKRVLELVKIGGLIGYDNTLWAGSVAAPPDAPLMDYIKPLRGHVMELNKYLAQDSRIEICQLPVGDGITLCRRII*

>Glyma17g18800.2   sequence type=predicted peptide   gene model=Glyma17g18800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANEEEQKNHLFGIKDLGHKTLLQSDALYQYILETSVYPREHECLKEIRKMTAKHPLNIMATPADEGQLLSMLVKLTNSKNALEIGVFTGYSLLSTALALPPDGKENKKGSLDFVFVDADKDNYLNYHKRVLELVKIGGLIGYDNTLWAGSVAAPPDAPLMDYIKPLRGHVMELNKYLAQDSRIEICQLPVGDGITLCRRII*

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